WormBase Tree Display for Variation: WBVar00050951
expand all nodes | collapse all nodes | view schema
| WBVar00050951 | Name | Public_name | WBVar00050951 | ||
|---|---|---|---|---|---|
| Other_name | pas21787 | ||||
| haw105133 | |||||
| cewivar00058633 | |||||
| C54D2.5g.1:c.4980+45C>T | |||||
| C54D2.5e.1:c.4935+45C>T | |||||
| C54D2.5a.2:c.4914+45C>T | |||||
| C54D2.5a.1:c.4914+45C>T | |||||
| C54D2.5a.3:c.4914+45C>T | |||||
| C54D2.5c.1:c.4959+45C>T | |||||
| C54D2.5d.1:c.5058+45C>T | |||||
| HGVSg | CHROMOSOME_X:g.7850400G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | C54D2 | |
| Flanking_sequences | ttaatttcaagttaatcaattttgtttttatttttcctcatcaattttagattcaaaatttgaataattgttacgaaataggaagtttgaagacacaacgcaataaattttactacaacccccagtttgacactagatacaattattattttccgacagttattttatctatcaaaaatgtaaaacttttagttttaaaaattgattacaataacattttgctacaaaattctcgcatgcaaattgtaacctttggaaatctacacttattgtttctgcaattctaatctcctgctattg | taatctttgtgtgacccaaaaaaaatagataaatccccaagtaccttcataattccattccaattatcacccgtcgctattcgaaagagtgttaaaaaagccattccaaaatttttaaaatgcgcatgttctcctaatccatcacacggatgatcttcagagcactccagttttccaaacagttcaacaccaagtgcagcaaatatgaagaaaagaaggaagaacagagacccgagatttccaacctataaaccaatactttctatttgtcacgaaaaatgatcacacctggggcaacgc | |||
| Mapping_target | C54D2 | ||||
| Type_of_mutation | Substitution | G | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (34) | |||||
| Laboratory | RW | ||||
| Person | WBPerson6900 | ||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00080773 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00000367 | |||
| Transcript | C54D2.5a.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | C54D2.5a.1:c.4914+45C>T | ||||
| Intron_number | 27/31 | ||||
| C54D2.5g.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C54D2.5g.1:c.4980+45C>T | ||||
| Intron_number | 25/28 | ||||
| C54D2.5a.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C54D2.5a.2:c.4914+45C>T | ||||
| Intron_number | 28/32 | ||||
| C54D2.5c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C54D2.5c.1:c.4959+45C>T | ||||
| Intron_number | 26/30 | ||||
| C54D2.5a.3 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C54D2.5a.3:c.4914+45C>T | ||||
| Intron_number | 26/30 | ||||
| C54D2.5d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C54D2.5d.1:c.5058+45C>T | ||||
| Intron_number | 27/31 | ||||
| C54D2.5e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C54D2.5e.1:c.4935+45C>T | ||||
| Intron_number | 26/30 | ||||
| Method | WGS_Pasadena_Quinlan |
