WormBase Tree Display for Variation: WBVar00047966
expand all nodes | collapse all nodes | view schema
| WBVar00047966 | Name | Public_name | WBVar00047966 | ||
|---|---|---|---|---|---|
| Other_name (14) | |||||
| HGVSg | CHROMOSOME_X:g.7276855C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | T10A3 | |
| Flanking_sequences | gattagcttgcatgtctaaacccccttggtaagaccccttcagtaaagcatgtgatttacttttcagcacgctgtttccgctcaagacaccgccaccaccactgccgcctacaccagcgcccaacgacgatgaatccgagtttttatgatcgccataaatatatcgaaggaggtctgaaaaactcatcaaaatgtcaacatgggatttcaagagtacgcacacaaacccttctcagaattgcattcctcggacaacctctgcacattcgacgctcccatatcatcatgaaatgcggtttt | ccaccagaggccacaactgctgacgtagacatcttcaaagtgttaccaccgcctccagcaataatatcctcttcagaagatgacattgatcgaagttgccttcaaacaattactttgaacaaataaaatgaagaagaatgtatgacaaaaaatgcagtttatgtgaaattgaactactgatgaagagcgaaaaaagctaaatgaggcaatgctcattaaaaatttgcattgaaaccgaaaggcgctcttctggtttctgttttgctgttggtttgactaaaaaagtgatcagcagaacaa | |||
| Mapping_target | T10A3 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (30) | |||||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006750 | |||
| Transcript | T10A3.1c.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | T10A3.1c.1:c.1521G>A | ||||
| HGVSp | CE53614:p.Gly507= | ||||
| cDNA_position | 1521 | ||||
| CDS_position | 1521 | ||||
| Protein_position | 507 | ||||
| Exon_number | 12/29 | ||||
| Codon_change | ggG/ggA | ||||
| Amino_acid_change | G | ||||
| T10A3.1d.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | T10A3.1d.1:c.1521G>A | ||||
| HGVSp | CE53668:p.Gly507= | ||||
| cDNA_position | 1521 | ||||
| CDS_position | 1521 | ||||
| Protein_position | 507 | ||||
| Exon_number | 12/28 | ||||
| Codon_change | ggG/ggA | ||||
| Amino_acid_change | G | ||||
| T10A3.1e.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | T10A3.1e.1:c.1521G>A | ||||
| HGVSp | CE53500:p.Gly507= | ||||
| cDNA_position | 1521 | ||||
| CDS_position | 1521 | ||||
| Protein_position | 507 | ||||
| Exon_number | 12/28 | ||||
| Codon_change | ggG/ggA | ||||
| Amino_acid_change | G | ||||
| T10A3.1b.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | T10A3.1b.1:c.1521G>A | ||||
| HGVSp | CE31234:p.Gly507= | ||||
| cDNA_position | 1521 | ||||
| CDS_position | 1521 | ||||
| Protein_position | 507 | ||||
| Exon_number | 12/28 | ||||
| Codon_change | ggG/ggA | ||||
| Amino_acid_change | G | ||||
| T10A3.1a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | T10A3.1a.1:c.1521G>A | ||||
| HGVSp | CE30169:p.Gly507= | ||||
| cDNA_position | 1542 | ||||
| CDS_position | 1521 | ||||
| Protein_position | 507 | ||||
| Exon_number | 13/28 | ||||
| Codon_change | ggG/ggA | ||||
| Amino_acid_change | G | ||||
| T10A3.1f.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | T10A3.1f.1:c.1521G>A | ||||
| HGVSp | CE53547:p.Gly507= | ||||
| cDNA_position | 1521 | ||||
| CDS_position | 1521 | ||||
| Protein_position | 507 | ||||
| Exon_number | 12/27 | ||||
| Codon_change | ggG/ggA | ||||
| Amino_acid_change | G | ||||
| Method | WGS_Pasadena_Quinlan |
