WormBase Tree Display for Variation: WBVar00047261
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| WBVar00047261 | Name | Public_name | WBVar00047261 | ||
|---|---|---|---|---|---|
| Other_name | pas21049 | ||||
| cewivar00057471 | |||||
| C54D1.3d.1:c.919-3C>T | |||||
| C54D1.3b.1:c.1189-3C>T | |||||
| C54D1.3c.1:c.919-3C>T | |||||
| C54D1.3e.1:c.1189-3C>T | |||||
| HGVSg | CHROMOSOME_X:g.7134299C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | C54D1 | |
| Flanking_sequences | tacgtggaaagcttgaaaacagacgggttcacaaacatatgtactgttgccaaagagcttttaggaaagaaaaggtatatattttcacataaaaagattccatgggatttctataatgttaactttagattatgcctttatccaaatacacttgccattgttgatctctgcattgaaccaactgcctatggtctcccacctgccgggtttcccccattccgtgcatcaagcatgttcattttggaggtaattcgcaattttggcaaacttttgcatgtcactgtgtaaactttaaacttt | agcgaaatacggttgcttactacggttttcgtgaaaactatttctatgtacgaattggaaagggaagcccctatcgagggtttgagttattgttccaagtggacactaacgaagtttgtaaggaaatttactcacgtcttagagcactcgctgatcgtgatcttgaaaaccggaaacaagaatctatacggttagtgaattctttggttttttcaaaaaggaatttactttttgttttcaggagaccagaaaggtaagtgaagcgtcaacaaaaacagtctgggaagataattcaagctg | |||
| Mapping_target | C54D1 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (23) | |||||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00002163 | |||
| Transcript | C54D1.3e.1 | VEP_consequence | splice_region_variant,intron_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | C54D1.3e.1:c.1189-3C>T | ||||
| Intron_number | 7/18 | ||||
| C54D1.3d.1 | VEP_consequence | splice_region_variant,intron_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | C54D1.3d.1:c.919-3C>T | ||||
| Intron_number | 6/17 | ||||
| C54D1.3c.1 | VEP_consequence | splice_region_variant,intron_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | C54D1.3c.1:c.919-3C>T | ||||
| Intron_number | 7/16 | ||||
| C54D1.3b.1 | VEP_consequence | splice_region_variant,intron_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | C54D1.3b.1:c.1189-3C>T | ||||
| Intron_number | 8/18 | ||||
| Method | WGS_Pasadena_Quinlan |
