WormBase Tree Display for Variation: WBVar00042634
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| WBVar00042634 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00042634 | ||||
| Other_name | cbs31946 | |||||
| cb31946 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrV:g.17475647T>A | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc4109 | ||
| Flanking_sequences | gcatggtcctgaaattttgaaaaaa | tatttttgtattaattttaacaagg | ||||
| Mapping_target | cb25.fpc4109 | |||||
| Type_of_mutation | Substitution | A | T | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 745 203 52 | ||
| TCGA | EsaBC3I, TaqI, TthHB8I | 673 203 71 53 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 119 78 75 68 66 59 58 52 46 43 40 37 26 26 23 20 16 15 15 14 13 13 13 13 11 9 9 8 8 7 | ||||
| AATATT | SspI | 499 269 232 | ||||
| Polymorphic_strain_digest | TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 532 213 203 52 | |||
| TCGA | EsaBC3I, TaqI, TthHB8I | 461 212 203 71 53 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 119 78 75 68 66 59 58 52 46 43 40 37 26 23 20 16 15 15 15 14 13 13 13 13 11 11 9 9 8 8 7 | ||||
| AATATT | SspI | 731 269 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00037973 | ||||
| WBGene00037974 | ||||||
| Transcript | CBG18583.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG18583.1:c.134-18T>A | |||||
| Intron_number | 2/8 | |||||
| CBG18584a.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG18584a.1:c.574-3176A>T | |||||
| Intron_number | 5/14 | |||||
| CBG18584b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG18584b.1:c.574-3176A>T | |||||
| Intron_number | 5/14 | |||||
| CBG18584c.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG18584c.1:c.574-3176A>T | |||||
| Intron_number | 5/13 | |||||
| CBG18584d.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG18584d.1:c.574-3176A>T | |||||
| Intron_number | 5/15 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: CrossMatch, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
