WormBase Tree Display for Variation: WBVar00041816
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| WBVar00041816 | Name | Public_name | WBVar00041816 | ||
|---|---|---|---|---|---|
| Other_name | pas19960 | ||||
| cewivar00081853 | |||||
| F36H5.3a.1:c.1263C>T | |||||
| F36H5.3b.1:c.1263C>T | |||||
| CE09960:p.Ser421= | |||||
| CE35525:p.Ser421= | |||||
| HGVSg | CHROMOSOME_II:g.1764987C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | F36H5 | |
| Flanking_sequences | gcaacgcaggtcgggatttgtcgtgatttttctatattgtcggagaaaatcctatccacatcaaatttggacggtttacgcgaaatgctggttcaagttggtgtcagccaacgggaaaagtttgatgagacttcaaaatgctgtttttcaatgcgaagacacttgtgaattggataagttcaccagatgggaggatatgatgacggattatgcgattgacgattatgtgactatagaggctcatgttgaaatttatgatattgttgaaaaggatattgatttattggcaccttcactgag | aatgccctggatgaacagactttttatgcgtaatttcttggttttcgactagaaggatctacctataaatacattttttacagaggaagcttcttttcagctttcacaatcagtaatatttcgagatttgaagatgatgagaaacaatggggtaatacggaaaaacgttataatattccatggtaagtccatgtcactttgcagcaaaaaagcctaatgtttcaggaggctgcgagcgaaaaaatcatttgattttctcgaaattaatctgttctgcgacgaagaaaatattatgactac | |||
| Mapping_target | F36H5 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00018102 | |||
| Transcript | F36H5.3b.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | F36H5.3b.1:c.1263C>T | ||||
| HGVSp | CE09960:p.Ser421= | ||||
| cDNA_position | 1263 | ||||
| CDS_position | 1263 | ||||
| Protein_position | 421 | ||||
| Exon_number | 6/12 | ||||
| Codon_change | agC/agT | ||||
| Amino_acid_change | S | ||||
| F36H5.3a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F36H5.3a.1:c.1263C>T | ||||
| HGVSp | CE35525:p.Ser421= | ||||
| cDNA_position | 1263 | ||||
| CDS_position | 1263 | ||||
| Protein_position | 421 | ||||
| Exon_number | 6/13 | ||||
| Codon_change | agC/agT | ||||
| Amino_acid_change | S | ||||
| Method | WGS_Pasadena_Quinlan |
