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WormBase Tree Display for Variation: WBVar00038366

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Name Class

WBVar00038366NamePublic_nameWBVar00038366
Other_namepas19270
cewivar00080111
F56D12.1b.1:c.178-4T>C
F56D12.1a.2:c.178-4T>C
F56D12.1c.1:c.178-4T>C
F56D12.1a.1:c.178-4T>C
HGVSgCHROMOSOME_II:g.1309362A>G
Sequence_detailsSMapS_parentSequenceF56D12
Flanking_sequencesaaatctgacgattttatagcgaaatcccctggcgtatttgctcacttaagcggttttctctcccaggcgcctctcgcctgaagagccacatcgatggcttcttgaatttgctctccggtggcataagtgtacttggcaagtgttgaacgatggtcagagggctgaaaatattgattttttgatttttaccgggtaaatttacatgtaaaaactagttaaactcacaataacttgcttctgctccaatttattcgtgattttcttgtcgccaattctcaatggaacttctgtgatgttctgaatagtaaaatattgaaaatttaggcagaaaatattcaaaataggaataattccccgagagaaacatttgcaatgtctgcgtctcttctaccgctgctaatctctcaccactactagtcaattggattgttatcgctcgggtttccccgtattttctaggccattctctcactattcgataacttttttcgcactttttttgaagaattaaccttgctgtagaacgccaacgctgcctccaaatcctgtcgttctttgcttccttttcgatactctaaaatcggctcatttgtcttcttt
Mapping_targetF56D12
Type_of_mutationSubstitutionAG
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00000034From_analysisMillion_mutation_project_reanalysis
WBStrain00004599From_analysisMillion_mutation_project_reanalysis
WBStrain00004604From_analysisWGS_Pasadena_Quinlan
WBStrain00006625From_analysisMillion_mutation_project_reanalysis
WBStrain00023665From_analysisMillion_mutation_project_reanalysis
WBStrain00027652From_analysisMillion_mutation_project_reanalysis
PersonWBPerson6900
AnalysisWGS_Pasadena_Quinlan
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00000112
TranscriptF56D12.1b.1VEP_consequencesplice_region_variant,intron_variant
VEP_impactLOW
HGVScF56D12.1b.1:c.178-4T>C
Intron_number2/7
F56D12.1a.2VEP_consequencesplice_region_variant,intron_variant
VEP_impactLOW
HGVScF56D12.1a.2:c.178-4T>C
Intron_number3/9
F56D12.1a.1VEP_consequencesplice_region_variant,intron_variant
VEP_impactLOW
HGVScF56D12.1a.1:c.178-4T>C
Intron_number2/8
F56D12.1c.1VEP_consequencesplice_region_variant,intron_variant
VEP_impactLOW
HGVScF56D12.1c.1:c.178-4T>C
Intron_number1/5
MethodWGS_Pasadena_Quinlan