WormBase Tree Display for Variation: WBVar00038366
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WBVar00038366 | Name | Public_name | WBVar00038366 | ||
---|---|---|---|---|---|
Other_name | pas19270 | ||||
cewivar00080111 | |||||
F56D12.1b.1:c.178-4T>C | |||||
F56D12.1a.2:c.178-4T>C | |||||
F56D12.1c.1:c.178-4T>C | |||||
F56D12.1a.1:c.178-4T>C | |||||
HGVSg | CHROMOSOME_II:g.1309362A>G | ||||
Sequence_details | SMap | S_parent | Sequence | F56D12 | |
Flanking_sequences | aaatctgacgattttatagcgaaatcccctggcgtatttgctcacttaagcggttttctctcccaggcgcctctcgcctgaagagccacatcgatggcttcttgaatttgctctccggtggcataagtgtacttggcaagtgttgaacgatggtcagagggctgaaaatattgattttttgatttttaccgggtaaatttacatgtaaaaactagttaaactcacaataacttgcttctgctccaatttattcgtgattttcttgtcgccaattctcaatggaacttctgtgatgttctg | aatagtaaaatattgaaaatttaggcagaaaatattcaaaataggaataattccccgagagaaacatttgcaatgtctgcgtctcttctaccgctgctaatctctcaccactactagtcaattggattgttatcgctcgggtttccccgtattttctaggccattctctcactattcgataacttttttcgcactttttttgaagaattaaccttgctgtagaacgccaacgctgcctccaaatcctgtcgttctttgcttccttttcgatactctaaaatcggctcatttgtcttcttt | |||
Mapping_target | F56D12 | ||||
Type_of_mutation | Substitution | A | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
Person | WBPerson6900 | ||||
Analysis | WGS_Pasadena_Quinlan | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00000112 | |||
Transcript | F56D12.1b.1 | VEP_consequence | splice_region_variant,intron_variant | ||
VEP_impact | LOW | ||||
HGVSc | F56D12.1b.1:c.178-4T>C | ||||
Intron_number | 2/7 | ||||
F56D12.1a.2 | VEP_consequence | splice_region_variant,intron_variant | |||
VEP_impact | LOW | ||||
HGVSc | F56D12.1a.2:c.178-4T>C | ||||
Intron_number | 3/9 | ||||
F56D12.1a.1 | VEP_consequence | splice_region_variant,intron_variant | |||
VEP_impact | LOW | ||||
HGVSc | F56D12.1a.1:c.178-4T>C | ||||
Intron_number | 2/8 | ||||
F56D12.1c.1 | VEP_consequence | splice_region_variant,intron_variant | |||
VEP_impact | LOW | ||||
HGVSc | F56D12.1c.1:c.178-4T>C | ||||
Intron_number | 1/5 | ||||
Method | WGS_Pasadena_Quinlan |