WormBase Tree Display for Variation: WBVar00038346
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WBVar00038346 | Name | Public_name | WBVar00038346 | ||
---|---|---|---|---|---|
Other_name (11) | |||||
HGVSg | CHROMOSOME_II:g.1308844A>G | ||||
Sequence_details | SMap | S_parent | Sequence | F56D12 | |
Flanking_sequences | ccagcagacccaatcttatcaaaatcacattggtctgctaaatcgaaatttgtagtttgtagtctagcagacccaatttctacaaaaccaaatcggcaaatttgaggaatttcagcttaatttagcaatttttctcggaaattttcaaattttcatcacgaatttcggcttttcaaggctatttctagttttttggcacaccataagcgccggagcagtcggcaaatttcctccgatcgccgtaaaattgaacggtgcgattgcggcgacgaatccctccattccacggaactgcatcgt | tttttggtgattttcgtggaaatcggctcataatgctccagctccatagcgaaaaccgcgttgaatcggaagaaatcgatgagctcacaggcggcgtcaatttcagcctgaataatattctttccctggccgagcatcgtggaggcgttcagcttcattcggtactttccagcggccaaatcggcggcgcggagcaaaatttcagctcgttctctgaaaatctgacgattttatagcgaaatcccctggcgtatttgctcacttaagcggttttctctcccaggcgcctctcgcctgaag | |||
Mapping_target | F56D12 | ||||
Type_of_mutation | Substitution | A | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
Person | WBPerson6900 | ||||
Analysis | WGS_Pasadena_Quinlan | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00000112 | |||
Transcript | F56D12.1b.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | F56D12.1b.1:c.579T>C | ||||
HGVSp | CE33403:p.Asn193= | ||||
cDNA_position | 581 | ||||
CDS_position | 579 | ||||
Protein_position | 193 | ||||
Exon_number | 5/8 | ||||
Codon_change | aaT/aaC | ||||
Amino_acid_change | N | ||||
F56D12.1a.2 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F56D12.1a.2:c.579T>C | ||||
HGVSp | CE29047:p.Asn193= | ||||
cDNA_position | 678 | ||||
CDS_position | 579 | ||||
Protein_position | 193 | ||||
Exon_number | 6/10 | ||||
Codon_change | aaT/aaC | ||||
Amino_acid_change | N | ||||
F56D12.1a.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F56D12.1a.1:c.579T>C | ||||
HGVSp | CE29047:p.Asn193= | ||||
cDNA_position | 582 | ||||
CDS_position | 579 | ||||
Protein_position | 193 | ||||
Exon_number | 5/9 | ||||
Codon_change | aaT/aaC | ||||
Amino_acid_change | N | ||||
F56D12.1d.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F56D12.1d.1:c.159T>C | ||||
HGVSp | CE40074:p.Asn53= | ||||
cDNA_position | 159 | ||||
CDS_position | 159 | ||||
Protein_position | 53 | ||||
Exon_number | 1/4 | ||||
Codon_change | aaT/aaC | ||||
Amino_acid_change | N | ||||
F56D12.1c.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F56D12.1c.1:c.579T>C | ||||
HGVSp | CE37118:p.Asn193= | ||||
cDNA_position | 579 | ||||
CDS_position | 579 | ||||
Protein_position | 193 | ||||
Exon_number | 4/6 | ||||
Codon_change | aaT/aaC | ||||
Amino_acid_change | N | ||||
Method | WGS_Pasadena_Quinlan |