WormBase Tree Display for Variation: WBVar00038341
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WBVar00038341 | Name | Public_name | WBVar00038341 | ||
---|---|---|---|---|---|
Other_name (11) | |||||
HGVSg | CHROMOSOME_II:g.1308814G>A | ||||
Sequence_details | SMap | S_parent | Sequence | F56D12 | |
Flanking_sequences | tctgctaaatcaaattttgtagtttgtagtccagcagacccaatcttatcaaaatcacattggtctgctaaatcgaaatttgtagtttgtagtctagcagacccaatttctacaaaaccaaatcggcaaatttgaggaatttcagcttaatttagcaatttttctcggaaattttcaaattttcatcacgaatttcggcttttcaaggctatttctagttttttggcacaccataagcgccggagcagtcggcaaatttcctccgatcgccgtaaaattgaacggtgcgattgcggcgac | aatccctccattccacggaactgcatcgtatttttggtgattttcgtggaaatcggctcataatgctccagctccatagcgaaaaccgcgttgaatcggaagaaatcgatgagctcacaggcggcgtcaatttcagcctgaataatattctttccctggccgagcatcgtggaggcgttcagcttcattcggtactttccagcggccaaatcggcggcgcggagcaaaatttcagctcgttctctgaaaatctgacgattttatagcgaaatcccctggcgtatttgctcacttaagcgg | |||
Mapping_target | F56D12 | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
Person | WBPerson6900 | ||||
Analysis | WGS_Pasadena_Quinlan | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00000112 | |||
Transcript | F56D12.1b.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | F56D12.1b.1:c.609C>T | ||||
HGVSp | CE33403:p.Phe203= | ||||
cDNA_position | 611 | ||||
CDS_position | 609 | ||||
Protein_position | 203 | ||||
Exon_number | 5/8 | ||||
Codon_change | ttC/ttT | ||||
Amino_acid_change | F | ||||
F56D12.1a.2 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F56D12.1a.2:c.609C>T | ||||
HGVSp | CE29047:p.Phe203= | ||||
cDNA_position | 708 | ||||
CDS_position | 609 | ||||
Protein_position | 203 | ||||
Exon_number | 6/10 | ||||
Codon_change | ttC/ttT | ||||
Amino_acid_change | F | ||||
F56D12.1a.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F56D12.1a.1:c.609C>T | ||||
HGVSp | CE29047:p.Phe203= | ||||
cDNA_position | 612 | ||||
CDS_position | 609 | ||||
Protein_position | 203 | ||||
Exon_number | 5/9 | ||||
Codon_change | ttC/ttT | ||||
Amino_acid_change | F | ||||
F56D12.1d.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F56D12.1d.1:c.189C>T | ||||
HGVSp | CE40074:p.Phe63= | ||||
cDNA_position | 189 | ||||
CDS_position | 189 | ||||
Protein_position | 63 | ||||
Exon_number | 1/4 | ||||
Codon_change | ttC/ttT | ||||
Amino_acid_change | F | ||||
F56D12.1c.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F56D12.1c.1:c.609C>T | ||||
HGVSp | CE37118:p.Phe203= | ||||
cDNA_position | 609 | ||||
CDS_position | 609 | ||||
Protein_position | 203 | ||||
Exon_number | 4/6 | ||||
Codon_change | ttC/ttT | ||||
Amino_acid_change | F | ||||
Method | WGS_Pasadena_Quinlan |