WormBase Tree Display for Variation: WBVar00038321
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| WBVar00038321 | Evidence | Paper_evidence | WBPaper00040707 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00038321 | |||
| Other_name (11) | |||||
| HGVSg | CHROMOSOME_II:g.1307905T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | F56D12 | |
| Flanking_sequences | ctttggccaaatcgattttggcgcgtacatcctggagcacgccgagcacttttgtcccgaatattcccaggcggaacgggcggttccagcggcgacagcgtccacgtgggcggatggatgcacaaagtggaagttttttccgccgcattctccgatgagtttcggaaaagtcacatagttatccaaattctcggcgacttttctccaaatcgtcttgaaagttggcacggagccagtgaaattgacagcgctcaagtgtggagatgcggtgatgacgtcaccgaaaacggggccatctga | ggcaagaatgagagaattccaggtggcataccagcttcctcgaggagttcgtagattatataattggagagcacggcggtgttcgatggcttccagagggagacgttaccctgaaaaaattgggataaaaatgatttttttttcgaggggaaaatggcattaaaatcgcgaatttcatagatttctcaaaaaaaaaagttaaaaattccaaaaaaattgcctgaaatctcagcattttgggtctgctaaatcgaaacttgtagtttgtagcctagcagacccaatttcttcaaaactact | |||
| Mapping_target | F56D12 | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (44) | |||||
| Laboratory | QX | ||||
| Person | WBPerson6900 | ||||
| WBPerson1730 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01435886 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00000112 | |||
| Transcript | F56D12.1b.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | F56D12.1b.1:c.789A>G | ||||
| HGVSp | CE33403:p.Pro263= | ||||
| cDNA_position | 791 | ||||
| CDS_position | 789 | ||||
| Protein_position | 263 | ||||
| Exon_number | 6/8 | ||||
| Codon_change | ccA/ccG | ||||
| Amino_acid_change | P | ||||
| F56D12.1a.2 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F56D12.1a.2:c.789A>G | ||||
| HGVSp | CE29047:p.Pro263= | ||||
| cDNA_position | 888 | ||||
| CDS_position | 789 | ||||
| Protein_position | 263 | ||||
| Exon_number | 7/10 | ||||
| Codon_change | ccA/ccG | ||||
| Amino_acid_change | P | ||||
| F56D12.1a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F56D12.1a.1:c.789A>G | ||||
| HGVSp | CE29047:p.Pro263= | ||||
| cDNA_position | 792 | ||||
| CDS_position | 789 | ||||
| Protein_position | 263 | ||||
| Exon_number | 6/9 | ||||
| Codon_change | ccA/ccG | ||||
| Amino_acid_change | P | ||||
| F56D12.1d.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F56D12.1d.1:c.369A>G | ||||
| HGVSp | CE40074:p.Pro123= | ||||
| cDNA_position | 369 | ||||
| CDS_position | 369 | ||||
| Protein_position | 123 | ||||
| Exon_number | 2/4 | ||||
| Codon_change | ccA/ccG | ||||
| Amino_acid_change | P | ||||
| F56D12.1c.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F56D12.1c.1:c.789A>G | ||||
| HGVSp | CE37118:p.Pro263= | ||||
| cDNA_position | 789 | ||||
| CDS_position | 789 | ||||
| Protein_position | 263 | ||||
| Exon_number | 5/6 | ||||
| Codon_change | ccA/ccG | ||||
| Amino_acid_change | P | ||||
| Reference | WBPaper00040707 | ||||
| Method | WGS_Pasadena_Quinlan |
