WormBase Tree Display for Variation: WBVar00038281
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| WBVar00038281 | Name | Public_name | WBVar00038281 | ||
|---|---|---|---|---|---|
| Other_name | pas19253 | ||||
| cewivar00606586 | |||||
| F56D12.1b.1:c.*329G>T | |||||
| F56D12.1a.1:c.1476-176G>T | |||||
| F56D12.1d.1:c.1056-176G>T | |||||
| F56D12.1a.2:c.1476-176G>T | |||||
| HGVSg | CHROMOSOME_II:g.1306777C>A | ||||
| Sequence_details | SMap | S_parent | Sequence | F56D12 | |
| Flanking_sequences | caccggccttatcattggttccggacaatctggagcctccgaatggctgctggccgacgattgatccagttgatttgtcgttgaggtacatgttgccgacggcgtcgcggagaacatcgcgagctctgagaaaaaaaaacactttgttgaaaaacgtttttaacacaaaaattcgcctcaaaaatctcgaaaaatcgatcgaaatccaacaaaaattccaataaaaaataccgtagccctttaaagggacacacactttcactgttgggtctcgccacgctcaggaacatcttactgtcg | tttcaaattttttgtttgttgttatcgcttttttttttcgatttttgccagtttttctagcttttcatttgatttgtgacgaaattcgagggtttttattggagaaattgtgtaattatcgtttttcgacattttttaacctattttgttcggttatagagaaatttcttgaaaattgccgaaaaaacagaatttcaagatttcgaattttccgggaataattttaaatcgacttttggcagttttcttgtgcctaaaatgttgaatttcagcatttttgaacataacaaacccgaaaat | |||
| Mapping_target | F56D12 | ||||
| Type_of_mutation | Substitution | C | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | ||
| WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | |||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00000112 | |||
| Transcript | F56D12.1b.1 | VEP_consequence | 3_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F56D12.1b.1:c.*329G>T | ||||
| cDNA_position | 1870 | ||||
| Exon_number | 8/8 | ||||
| F56D12.1a.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F56D12.1a.2:c.1476-176G>T | ||||
| Intron_number | 8/9 | ||||
| F56D12.1a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F56D12.1a.1:c.1476-176G>T | ||||
| Intron_number | 7/8 | ||||
| F56D12.1d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F56D12.1d.1:c.1056-176G>T | ||||
| Intron_number | 3/3 | ||||
| Method | WGS_Pasadena_Quinlan |
