WormBase Tree Display for Variation: WBVar00038261
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| WBVar00038261 | Name | Public_name | WBVar00038261 | ||
|---|---|---|---|---|---|
| Other_name | pas19249 | ||||
| cewivar00080049 | |||||
| F56D12.1b.1:c.*547C>T | |||||
| CE29047:p.Leu506= | |||||
| CE40074:p.Leu366= | |||||
| F56D12.1d.1:c.1098C>T | |||||
| F56D12.1a.2:c.1518C>T | |||||
| F56D12.1a.1:c.1518C>T | |||||
| HGVSg | CHROMOSOME_II:g.1306559G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | Y57G7A | |
| Flanking_sequences | ttatgcgatcacgggggaaaaaaaattaaaattcagtggtaaagcaataattgttgacctaatcaaaaagaaaactatattctcaatatgagaaaaatcggaaatgaaaagaaaaaaacaacataattattccattgatggatatttccagtcagtcaatgacaccgacgtctccttaatcgtcagcggcgaggtccatcggagcccatagtgggggccaccggccttatcattggttccggacaatctggagcctccgaatggctgctggccgacgattgatccagttgatttgtcgtt | aggtacatgttgccgacggcgtcgcggagaacatcgcgagctctgagaaaaaaaaacactttgttgaaaaacgtttttaacacaaaaattcgcctcaaaaatctcgaaaaatcgatcgaaatccaacaaaaattccaataaaaaataccgtagccctttaaagggacacacactttcactgttgggtctcgccacgctcaggaacatcttactgtcgctttcaaattttttgtttgttgttatcgcttttttttttcgatttttgccagtttttctagcttttcatttgatttgtgacga | |||
| Mapping_target | Y57G7A | ||||
| Type_of_mutation | Substitution | G | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00000112 | |||
| Transcript | F56D12.1b.1 | VEP_consequence | 3_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F56D12.1b.1:c.*547C>T | ||||
| cDNA_position | 2088 | ||||
| Exon_number | 8/8 | ||||
| F56D12.1a.2 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F56D12.1a.2:c.1518C>T | ||||
| HGVSp | CE29047:p.Leu506= | ||||
| cDNA_position | 1617 | ||||
| CDS_position | 1518 | ||||
| Protein_position | 506 | ||||
| Exon_number | 9/10 | ||||
| Codon_change | ctC/ctT | ||||
| Amino_acid_change | L | ||||
| F56D12.1a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F56D12.1a.1:c.1518C>T | ||||
| HGVSp | CE29047:p.Leu506= | ||||
| cDNA_position | 1521 | ||||
| CDS_position | 1518 | ||||
| Protein_position | 506 | ||||
| Exon_number | 8/9 | ||||
| Codon_change | ctC/ctT | ||||
| Amino_acid_change | L | ||||
| F56D12.1d.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F56D12.1d.1:c.1098C>T | ||||
| HGVSp | CE40074:p.Leu366= | ||||
| cDNA_position | 1098 | ||||
| CDS_position | 1098 | ||||
| Protein_position | 366 | ||||
| Exon_number | 4/4 | ||||
| Codon_change | ctC/ctT | ||||
| Amino_acid_change | L | ||||
| Method | WGS_Pasadena_Quinlan |
