WormBase Tree Display for Variation: WBVar00031176
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| WBVar00031176 | Name | Public_name | WBVar00031176 | ||
|---|---|---|---|---|---|
| Other_name | pas17832 | ||||
| cewivar00103965 | |||||
| Y71H2AM.11.1:c.1389C>G | |||||
| CE41075:p.Ala463= | |||||
| Y71H2AM.5.2:c.-5+18688G>C | |||||
| HGVSg | CHROMOSOME_III:g.2718372G>C | ||||
| Sequence_details | SMap | S_parent | Sequence | Y71H2AM | |
| Flanking_sequences | atgttttcttttttgtcataaatctgaataaaattagataaaaattgtttttgttttcgatttttgtaatctaaaattttttgggaaaaaatcgaaaatttttataattgcgatttaaaaattgattctcgctgaaaaattggttttgatgagaaatatacaatttatagaacagtttagtaggcgataattggagtggaaaaaattacaaaaaaaagtcgaaaatcaagagaaaatcagtaaaaataaaaaaaaaccaccaaaaaaaatttaggcagcagccagctcgaacaaataggc | gcgagcactttcattcccttcacaaaattgtcccgattgattttttcgttttgcgagtgagccatatcatcggatgcaccaattggaagaagcataactggacttttagtgagatcctggatggtcagcgtgactggaatacttccaccctctcgagtgaagtctggtgtcattccgtacactgaaagacaaatgcggtattaaacattttttgaaaacgacggccagggggttttttagtgtggcctagaaacattgaaaactaggccaccaccattacggaggccaaattcaaatttt | |||
| Mapping_target | Y71H2AM | ||||
| Type_of_mutation | Substitution | G | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00022170 | |||
| WBGene00022176 | |||||
| Transcript | Y71H2AM.5.2 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y71H2AM.5.2:c.-5+18688G>C | ||||
| Intron_number | 1/5 | ||||
| Y71H2AM.11.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y71H2AM.11.1:c.1389C>G | ||||
| HGVSp | CE41075:p.Ala463= | ||||
| cDNA_position | 1417 | ||||
| CDS_position | 1389 | ||||
| Protein_position | 463 | ||||
| Exon_number | 8/9 | ||||
| Codon_change | gcC/gcG | ||||
| Amino_acid_change | A | ||||
| Method | WGS_Pasadena_Quinlan |
