WormBase Tree Display for Variation: WBVar00026051
expand all nodes | collapse all nodes | view schema
| WBVar00026051 | Evidence | Paper_evidence | WBPaper00040707 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00026051 | |||
| Other_name | pas16807 | ||||
| cewivar00072192 | |||||
| W03D8.6a.1:c.3040-28C>T | |||||
| W03D8.6d.1:c.2539-28C>T | |||||
| W03D8.6e.1:c.2539-28C>T | |||||
| W03D8.6c.1:c.3040-28C>T | |||||
| W03D8.6b.1:c.3040-28C>T | |||||
| HGVSg | CHROMOSOME_I:g.2811213C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | W03D8 | |
| Flanking_sequences | aataaactatgttttctgggcccgttttttgtcggctgcacattttcttatccacttccaggttcacctttccgaagaagtgaatgtaaccctgacgctcaacaatttggacattgtctctcaatgcaccgtccgtgctcaacctggcacagaatacggagatatgaggtggattcaagttgcaattactcatgactcgaaatcttctcagctgcaagttgacgacgctgcgtgcactattagaacggtaggtcgaaactgtcctgggtgtaggcaggcatatctgcgcctacctacatt | cttgaattctcataatccaattttcagtcccgagtgctgtccgaaataccaattactcgactattggatgtctataattcagaattagttggaatgccagttggacttgccgcaccggttaagcctaatccttacacttttacttttatcggaaacgtgaatacaggagagaagactaatggtaaacgtttactgttttccgactgtctacccaggcgtaggtcgcctagtatttttctaatgctcatatttccagatggctctttcatcttggcgccaaagtacgagtccccaattccg | |||
| Mapping_target | W03D8 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (33) | |||||
| Laboratory | QX | ||||
| Person | WBPerson6900 | ||||
| WBPerson1730 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01430789 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00002174 | |||
| Transcript | W03D8.6b.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | W03D8.6b.1:c.3040-28C>T | ||||
| Intron_number | 20/31 | ||||
| W03D8.6e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W03D8.6e.1:c.2539-28C>T | ||||
| Intron_number | 16/26 | ||||
| W03D8.6d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W03D8.6d.1:c.2539-28C>T | ||||
| Intron_number | 16/26 | ||||
| W03D8.6a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W03D8.6a.1:c.3040-28C>T | ||||
| Intron_number | 19/29 | ||||
| W03D8.6c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W03D8.6c.1:c.3040-28C>T | ||||
| Intron_number | 20/31 | ||||
| Reference | WBPaper00040707 | ||||
| Method | WGS_Pasadena_Quinlan |
