WormBase Tree Display for Variation: WBVar00022023
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WBVar00022023 | Evidence | Paper_evidence | WBPaper00037807 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00022023 | |||
Other_name | haw35527 | ||||
cewivar00145805 | |||||
Y46E12BL.4a.1:c.50-477C>A | |||||
Y46E12BL.4e.1:c.233-477C>A | |||||
Y46E12BL.4h.1:c.395-477C>A | |||||
Y46E12BL.4f.1:c.50-477C>A | |||||
Y46E12BL.4g.1:c.233-477C>A | |||||
Y46E12BL.4i.1:c.185-477C>A | |||||
Y46E12BL.4b.1:c.50-477C>A | |||||
Y46E12BL.4c.1:c.395-477C>A | |||||
HGVSg | CHROMOSOME_II:g.15219715C>A | ||||
Sequence_details | SMap | S_parent | Sequence | Y46E12BL | |
Flanking_sequences | tccgaaaggtctcgaaacgaatcaa | aattgtttgcgagtctttttttcag | |||
Mapping_target | Y46E12BL | ||||
Type_of_mutation | Substitution | C | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004600 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004602 | From_analysis | WGS_De_Bono | |||
WGS_Hawaiian_Waterston | |||||
Million_mutation_project_reanalysis | |||||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01386527 | |||
Status | Live | ||||
Affects | Gene | WBGene00021597 | |||
Transcript | Y46E12BL.4h.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y46E12BL.4h.1:c.395-477C>A | ||||
Intron_number | 1/5 | ||||
Y46E12BL.4f.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y46E12BL.4f.1:c.50-477C>A | ||||
Intron_number | 1/5 | ||||
Y46E12BL.4i.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y46E12BL.4i.1:c.185-477C>A | ||||
Intron_number | 3/7 | ||||
Y46E12BL.4c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y46E12BL.4c.1:c.395-477C>A | ||||
Intron_number | 2/7 | ||||
Y46E12BL.4b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y46E12BL.4b.1:c.50-477C>A | ||||
Intron_number | 1/6 | ||||
Y46E12BL.4e.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y46E12BL.4e.1:c.233-477C>A | ||||
Intron_number | 1/5 | ||||
Y46E12BL.4a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y46E12BL.4a.1:c.50-477C>A | ||||
Intron_number | 1/4 | ||||
Y46E12BL.4g.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y46E12BL.4g.1:c.233-477C>A | ||||
Intron_number | 1/5 | ||||
Reference | WBPaper00037807 | ||||
Remark | [20081124 db] this Variation was previously named hw35527 | ||||
Method | WGS_Hawaiian_Waterston |