WormBase Tree Display for Variation: WBVar00014284

WBVar00014284 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00014284
    Other_name: cbs12730
      cb12730 Paper_evidence: WBPaper00055507
    HGVSg: chrV:g.17469636C>T
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc4109
    Flanking_sequences: aaaaataggaaattttttcttcttt aaacaaatataaattgtttaaaaat
    Mapping_target: cb25.fpc4109
    Type_of_mutation: Substitution: G A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CCGC AciI 527 282 127 64
        RAATTY AcsI, ApoI, XapI 263 86 75 72 71 69 53 41 40 40 38 28 28 21 20 19 11 10 9 6
        TTTAAA AhaIII, DraI 481 179 143 118 79
        CTNAG BstDEI, DdeI 370 309 212 109
        TCNGA Hpy188I 373 351 165 111
        TTAA MseI, Tru1I, Tru9I 307 143 142 117 89 63 47 37 23 17 15
        AATT Sse9I, TasI, Tsp509I, TspEI 91 74 71 69 64 61 57 53 43 41 40 40 37 31 28 28 27 21 20 19 15 12 11 11 11 10 9 6
      Polymorphic_strain_digest: CCGC AciI 809 127 64
        RAATTY AcsI, ApoI, XapI 263 75 74 72 71 69 53 41 40 40 38 28 28 21 20 19 12 11 10 9 6
        TTTAAA AhaIII, DraI 481 159 143 118 63 20 16
        CTNAG BstDEI, DdeI 370 212 160 149 109
        TCNGA Hpy188I 373 191 165 160 111
        TTAA MseI, Tru1I, Tru9I 307 143 122 117 89 63 48 37 23 20 16 15
        AATT Sse9I, TasI, Tsp509I, TspEI 91 75 74 71 69 61 57 53 43 41 40 40 37 31 28 28 27 21 20 19 15 12 11 11 10 9 6
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00037974
    Transcript: CBG18584a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG18584a.1:c.684-453G>A
        Intron_number: 6/14
      CBG18584b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG18584b.1:c.684-453G>A
        Intron_number: 6/14
      CBG18584c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG18584c.1:c.684-453G>A
        Intron_number: 6/13
      CBG18584d.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG18584d.1:c.684-453G>A
        Intron_number: 6/15
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: CrossMatch, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP