WormBase Tree Display for Variation: WBVar00010216
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| WBVar00010216 | Name | Public_name | WBVar00010216 | ||
|---|---|---|---|---|---|
| Other_name | pas13640 | ||||
| haw123960 | |||||
| cewivar00076472 | |||||
| C09E8.3.1:c.*25A>C | |||||
| C09E8.2a.1:c.-55A>C | |||||
| HGVSg | CHROMOSOME_II:g.551917A>C | ||||
| Sequence_details | SMap | S_parent | Sequence | C09E8 | |
| Flanking_sequences | aatccgatcattctgtccccattggtgttgtccccgttgatcctgtccccacaggtgttcaccccattgatcttgtccccgttcgctttgaatcctttgatcttgacacctatggtcggatccccgctgatcctgtccccattcgtcttgtcgccaattattctgtcgccacaggcgttgttcgcggtcgtgttgtccccgtacgccctgtccccactggttgagtcaaagcttattgctgctgaagttgtgttgtccccatcatggctttcataggcttttcgacctaaaatcccaacc | ctaatcgagtagaaatacgtgcaataataatttatttaatttatagtatgttacctattaattcattttcaaacttgttacatatcagttcaataaaccgcattttaatataaattccgctgagtagcgacctaaaacaaaattcacaaaacctaggtgtgatacggagcctgagtagcgactcgggtatggacaccaatttattttacatacctatgtaatttactattacactattaaatggaaatattaaagttaattctttgcttcacgagttttaagtttaagttaacactgatc | |||
| Mapping_target | C09E8 | ||||
| Type_of_mutation | Substitution | A | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (15) | |||||
| Laboratory | AX | ||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00543825 | |||
| WBVar01292078 | |||||
| WBVar01358146 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00015645 | |||
| WBGene00015646 | |||||
| Transcript | C09E8.3.1 | VEP_consequence | 3_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | C09E8.3.1:c.*25A>C | ||||
| cDNA_position | 2224 | ||||
| Exon_number | 10/10 | ||||
| C09E8.2a.1 | VEP_consequence | 5_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C09E8.2a.1:c.-55A>C | ||||
| cDNA_position | 64 | ||||
| Exon_number | 1/8 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
