WormBase Tree Display for Variation: WBVar00009146
expand all nodes | collapse all nodes | view schema
WBVar00009146 | Name | Public_name | WBVar00009146 | ||
---|---|---|---|---|---|
Other_name | pas13426 | ||||
cewivar00075953 | |||||
B0432.5a.1:c.46-390C>T | |||||
B0432.5b.1:c.-555C>T | |||||
Y43H11AL.3a.2:c.-12-3064G>A | |||||
HGVSg | CHROMOSOME_II:g.258258C>T | ||||
Sequence_details | SMap | S_parent | Sequence | B0432 | |
Flanking_sequences | ttgaaaaatagaatttccgtgatttttctgatattttgacctcgaaaacaatgttctttgtgttgtattctcagacaacctcatcaacacacactttttataatatctatagtaaaaaagaatagtatgagaagtcgaacagttaatgtgttattcaagtggaatgtgtgtatatatattctaggaagttttcatgaaaattttcaaattttagtgttttctttgagttttggcacattataacgcattaccaactaatttttcatacgctaacattctaaataatgtttgaaagtacct | tacaaaacgtacatactaactaaattgagtcacgtaacactgcaattactattgatttactaaaacaatcactgtgttcactttcatatgctgggttatcagttctcggccaataactttctcaatacccgtctaaccatctacagtaacccttcagaagtgtcgtctccattgtcaaaactaattgcggcggtgaacgtcgcaaggaacgtctcaattaacatgtcgtcactaaccaacaatactttcatggtaacttagaattaacaccctaagtgatcattttgaaaatccgacctt | |||
Mapping_target | B0432 | ||||
Type_of_mutation | Substitution | C | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
Person | WBPerson6900 | ||||
Analysis | WGS_Pasadena_Quinlan | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00004166 | |||
WBGene00000296 | |||||
Transcript | Y43H11AL.3a.2 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y43H11AL.3a.2:c.-12-3064G>A | ||||
Intron_number | 1/28 | ||||
B0432.5a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | B0432.5a.1:c.46-390C>T | ||||
Intron_number | 1/8 | ||||
B0432.5b.1 | VEP_consequence | 5_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | B0432.5b.1:c.-555C>T | ||||
cDNA_position | 362 | ||||
Exon_number | 1/9 | ||||
Method | WGS_Pasadena_Quinlan |