WormBase Tree Display for Variation: WBVar00005836
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| WBVar00005836 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00005836 | |||
| Other_name | pas12764 | ||||
| haw37293 | |||||
| cewivar00017570 | |||||
| C09F5.2b.1:c.798+86A>T | |||||
| C09F5.2a.2:c.810+86A>T | |||||
| C09F5.2a.1:c.810+86A>T | |||||
| HGVSg | CHROMOSOME_III:g.653922A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | C09F5 | |
| Flanking_sequences | atctgtcatggctcttctccacctgcatcggtcttctgctcttcctcgtcgaaatcggtgtcatcttctatgtaaagttcacggcagtcggttatccaactgcaggatatatcacaactgcaatgctggtgcctgttggagttgtattcgtggtgttcagttatttgattcacaaaaatcgcgtctcccactcgttgggcagattcaagcataaggtgaggattgtaatggagaaattgttttcaatattgaaatttgcatttataaggcaattgaatgtaaagatatctgcaaacattt | cagaaaactttaaaattgccaaatattattttgaacctaatttgagtacagtgtatctttttctacacttctacgactttaagggagggcgcatttattcgatggtctcgccacgcgctctaaaaatcaatagatggcgcgtggcgagaccatttcgcataaatgcgcccttctttagaagtgtttaaagaagtaataaaaaaaaattaagttacaacacttaagacttcttaatcacgtaatatgttattcaattgaatttcaaaaatctcatattccaggtggacacaatgaagcagt | |||
| Mapping_target | C09F5 | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (33) | |||||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00030853 | |||
| WBVar01389304 | |||||
| WBVar01254861 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00015648 | |||
| Transcript | C09F5.2a.2 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | C09F5.2a.2:c.810+86A>T | ||||
| Intron_number | 6/7 | ||||
| C09F5.2a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C09F5.2a.1:c.810+86A>T | ||||
| Intron_number | 8/9 | ||||
| C09F5.2b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C09F5.2b.1:c.798+86A>T | ||||
| Intron_number | 3/4 | ||||
| Reference | WBPaper00037807 | ||||
| Method | WGS_Pasadena_Quinlan |
