WormBase Tree Display for Variation: WBVar00002456
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WBVar00002456 | Name | Public_name | WBVar00002456 | ||
---|---|---|---|---|---|
Other_name | pas12088 | ||||
cewivar00066025 | |||||
F56C11.1.1:c.62-479C>T | |||||
F56C11.1.2:c.62-479C>T | |||||
HGVSg | CHROMOSOME_I:g.154159G>A | ||||
Sequence_details | SMap | S_parent | Sequence | F56C11 | |
Flanking_sequences | atttgccccgccacccgaaacaattattttcgtatcattttcgcacctatatttattctgtttgtttgcctattttttgtacattttatcctttttcttgtattgggcgacgatggcaaggtcagtaaaacaggaaattgttcctgataactcgggaatttcaggaatttttccaaaattggttgggaaaccaccactttgttgaaattcgaaagatacacattttgttatttaggtgtaaacatgaacactttcttaggtaaactatgtgatttttatgaaaaagaacacagacaccgg | tggcacacagagcttatcagtaaacagctatcagtgattttgaaattttggaggggcagaaatgttgcggacaaggaaaatttttgtttggaatttgaagttttgaaatacgcaatttgagaatttttgaacatttttttgtaatttttatcccattcatttttaacctaacattttgaaaatctagcacagaaaatagtacagacacgttcaattgagctattccaaaaattatcaatatagcgcacttggtgtccatcttccttaactgtttgcaattagtctctctttacaagaaat | |||
Mapping_target | F56C11 | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00004600 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022852 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022856 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022878 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022883 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022887 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022902 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023138 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00031113 | From_analysis | Million_mutation_project_reanalysis | |||
Person | WBPerson6900 | ||||
Analysis | WGS_Pasadena_Quinlan | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00000253 | |||
Transcript | F56C11.1.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F56C11.1.1:c.62-479C>T | ||||
Intron_number | 2/20 | ||||
F56C11.1.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F56C11.1.2:c.62-479C>T | ||||
Intron_number | 2/20 | ||||
Method | WGS_Pasadena_Quinlan |