WormBase Tree Display for Variation: WBVar00002406
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| WBVar00002406 | Name | Public_name | WBVar00002406 | ||
|---|---|---|---|---|---|
| Other_name | pas12078 | ||||
| cewivar00066000 | |||||
| F53G12.5b.1:c.630+1048C>T | |||||
| F53G12.5a.1:c.546+1048C>T | |||||
| F53G12.5a.2:c.546+1048C>T | |||||
| F53G12.5a.3:c.546+1048C>T | |||||
| HGVSg | CHROMOSOME_I:g.130381C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | F53G12 | |
| Flanking_sequences | actgctgtggcaaacaaacaaaaacaatcaaacttgtgcggaattgatattctaaagagaataaagagcaaccatgggcgccgaaacgagcagcggaagggcttgtgacctcttggtgtgaattttaaacggtttccttccatccgaaatgctaaaaattcctcgggagccgtttagggtcttcactgagagatgatgattagaatcttttaatttggtagaattccccccgcgggaccgattaatgttgcatgtcgtcttcttcttcttggcagcaaaatatcattgttgatgagatat | tcagtttgatgctcaatgacgccttgagaaacatccagcacacagtagattagtcgaattaccgatggatggggccgcccgggtttttggagccaagagtcacgcgatggggagtccacatacacacgcaccaactctttcattccatctaacagggtagtagggtgaagaaaaggggggggatcgcgatgacaaagagactcaattaattaaatgaccggggcgggcgccaaattgcacatatgcttggttttattgcaccgttggctcagggagagcaacattttgtggcagcaccag | |||
| Mapping_target | F53G12 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (150) | |||||
| Laboratory | QX | ||||
| AX | |||||
| Person | WBPerson6900 | ||||
| WBPerson1730 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01417382 | |||
| WBVar01429704 | |||||
| WBVar01276462 | |||||
| WBVar01276590 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00003229 | |||
| Transcript | F53G12.5a.2 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53G12.5a.2:c.546+1048C>T | ||||
| Intron_number | 6/9 | ||||
| F53G12.5a.3 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53G12.5a.3:c.546+1048C>T | ||||
| Intron_number | 5/8 | ||||
| F53G12.5b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53G12.5b.1:c.630+1048C>T | ||||
| Intron_number | 6/9 | ||||
| F53G12.5a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53G12.5a.1:c.546+1048C>T | ||||
| Intron_number | 4/7 | ||||
| Reference | WBPaper00040707 | ||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
