WormBase Tree Display for Variation: WBVar00089587
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WBVar00089587 | Name | Public_name | n536 | ||||||
---|---|---|---|---|---|---|---|---|---|
Other_name | T25C12.1b.1:c.*298_*904del | ||||||||
T25C12.1a.1:c.*298_*904del | |||||||||
HGVSg | CHROMOSOME_X:g.11484565_11485171del | ||||||||
Sequence_details | SMap | S_parent | Sequence | T25C12 | |||||
Flanking_sequences | tttatccaaacctatactgatgtatattgt | ttcagttgtttggggccaaatatctatatc | |||||||
Mapping_target | T25C12 | ||||||||
Type_of_mutation | Deletion | ||||||||
SeqStatus | Sequenced | ||||||||
Variation_type | Allele | ||||||||
Origin | Species | Caenorhabditis elegans | |||||||
Strain | WBStrain00026801 | ||||||||
WBStrain00026802 | |||||||||
WBStrain00026862 | |||||||||
WBStrain00026903 | |||||||||
WBStrain00040207 | |||||||||
WBStrain00040208 | |||||||||
WBStrain00040210 | |||||||||
Laboratory | MT | ||||||||
Status | Live | ||||||||
Linked_to | WBVar00089588 | ||||||||
WBVar00089589 | |||||||||
WBVar00089590 | |||||||||
WBVar00089592 | |||||||||
Affects | Gene | WBGene00220093 | |||||||
WBGene00003003 | |||||||||
WBGene00220094 | |||||||||
Transcript | T25C12.1b.1 | VEP_consequence | 3_prime_UTR_variant | ||||||
VEP_impact | MODIFIER | ||||||||
HGVSc | T25C12.1b.1:c.*298_*904del | ||||||||
cDNA_position | 2043-2649 | ||||||||
Exon_number | 12/12 | ||||||||
T25C12.12 | VEP_consequence | transcript_ablation | |||||||
VEP_impact | HIGH | ||||||||
Exon_number | 1/1 | ||||||||
T25C12.11 | VEP_consequence | non_coding_transcript_exon_variant | |||||||
VEP_impact | MODIFIER | ||||||||
cDNA_position | 73-? | ||||||||
Exon_number | 1/1 | ||||||||
T25C12.1a.1 | VEP_consequence | 3_prime_UTR_variant | |||||||
VEP_impact | MODIFIER | ||||||||
HGVSc | T25C12.1a.1:c.*298_*904del | ||||||||
cDNA_position | 2040-2646 | ||||||||
Exon_number | 14/14 | ||||||||
Genetics | Interpolated_map_position | X | 3.87852 | ||||||
Mapping_data | In_2_point | 251 | |||||||
In_pos_neg_data | 3918 | ||||||||
3920 | |||||||||
Description | Phenotype | WBPhenotype:0000201 | Person_evidence | WBPerson261 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | abnormal cuticle formation | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Semi_dominant | Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Variation_effect | Hypermorph_gain_of_function | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000358 | Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | extra divisions in sex mesoblasts, intestine etc. | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Semi_dominant | Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Variation_effect | Hypermorph_gain_of_function | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
EQ_annotations | Anatomy_term | WBbt:0008373 | PATO:0000460 | Person_evidence | WBPerson261 | ||||
Curator_confirmed | WBPerson712 | ||||||||
WBbt:0005772 | PATO:0000460 | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000438 | Paper_evidence | WBPaper00001144 | |||||||
Person_evidence | WBPerson261 | ||||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Animals continue past the L4 molt to an L5 stage animal, not to an adult stage. | Paper_evidence | WBPaper00001144 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Class I, retarded heterochronic alterations in many lineages | Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Semi_dominant | Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Dominant | Paper_evidence | WBPaper00001144 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Variation_effect | Hypermorph_gain_of_function | Paper_evidence | WBPaper00001144 | ||||||
Person_evidence | WBPerson261 | ||||||||
Curator_confirmed | WBPerson712 | ||||||||
Ease_of_scoring | ES3_Easy_to_score | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000446 | Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | supernumerary molts | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Semi_dominant | Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Variation_effect | Hypermorph_gain_of_function | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000699 | Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | abnormal vulval development | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Semi_dominant | Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Variation_effect | Hypermorph_gain_of_function | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0001228 | Paper_evidence | WBPaper00001144 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Animals do not form adult lateral alae. | Paper_evidence | WBPaper00001144 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Dominant | Paper_evidence | WBPaper00001144 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Variation_effect | Hypermorph_gain_of_function | Paper_evidence | WBPaper00001144 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Phenotype_not_observed | WBPhenotype:0000836 | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | gonadal lineages normal. | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Semi_dominant | Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Variation_effect | Hypermorph_gain_of_function | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
EQ_annotations | Anatomy_term | WBbt:0008373 | PATO:0000460 | Person_evidence | WBPerson261 | ||||
Curator_confirmed | WBPerson712 | ||||||||
WBbt:0005772 | PATO:0000460 | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Reference | WBPaper00001467 | ||||||||
WBPaper00038224 | |||||||||
WBPaper00014165 | |||||||||
WBPaper00016093 | |||||||||
WBPaper00014557 | |||||||||
WBPaper00001144 | |||||||||
WBPaper00016468 | |||||||||
WBPaper00016349 | |||||||||
WBPaper00014201 | |||||||||
Method | Deletion_allele |