WormBase Tree Display for Variation: WBVar00088387
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WBVar00088387 | Evidence | Paper_evidence | WBPaper00002930 | ||
---|---|---|---|---|---|
Name | Public_name | ky10 | |||
Other_name | B0212.5.1:c.517C>T | ||||
CE20445:p.Gln173Ter | |||||
HGVSg | CHROMOSOME_IV:g.3556045G>A | ||||
Sequence_details (5) | |||||
Variation_type | Allele | ||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00005214 | ||||
WBStrain00007483 | |||||
WBStrain00052609 | |||||
Laboratory | CX | ||||
Status | Live | ||||
Affects | Gene | WBGene00003889 | |||
Transcript | B0212.5.1 | VEP_consequence | stop_gained,splice_region_variant | ||
VEP_impact | HIGH | ||||
HGVSc | B0212.5.1:c.517C>T | ||||
HGVSp | CE20445:p.Gln173Ter | ||||
cDNA_position | 517 | ||||
CDS_position | 517 | ||||
Protein_position | 173 | ||||
Exon_number | 5/15 | ||||
Codon_change | Caa/Taa | ||||
Amino_acid_change | Q/* | ||||
Interactor (17) | |||||
Genetics | Interpolated_map_position | IV | -3.15548 | ||
Description | Phenotype (34) | ||||
Phenotype_not_observed (19) | |||||
Reference | WBPaper00002930 | ||||
WBPaper00038142 | |||||
WBPaper00043908 | |||||
WBPaper00031936 | |||||
WBPaper00031935 | |||||
WBPaper00029060 | |||||
WBPaper00032000 | |||||
WBPaper00023490 | |||||
WBPaper00005150 | |||||
WBPaper00017785 | |||||
WBPaper00019186 | |||||
WBPaper00032215 | |||||
WBPaper00035961 | |||||
WBPaper00037771 | |||||
WBPaper00043891 | |||||
WBPaper00048410 | |||||
WBPaper00059397 | |||||
WBPaper00059946 | |||||
WBPaper00060627 | |||||
WBPaper00045595 | |||||
WBPaper00061840 | |||||
WBPaper00061945 | |||||
WBPaper00064938 | |||||
WBPaper00064927 | |||||
WBPaper00065019 | |||||
Remark | Manually curated Gene associations preserved as a text remark so that VEP is the canonical predictor of consequence: WBGene00003889 Ochre_UAA Q(173) to stop | Paper_evidence | WBPaper00002930 | ||
Method | Substitution_allele |