WormBase Tree Display for Variation: WBVar00094400
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| WBVar00094400 | Name | Public_name | ok3383 | ||
|---|---|---|---|---|---|
| Other_name | CE06251:p.Glu116AspfsTer13 | ||||
| R06C7.8.1:c.348_956delinsCTTCGGAGCAAAAA | |||||
| HGVSg | CHROMOSOME_I:g.7252339_7252990delinsCTTCGGAGCAAAAA | ||||
| Sequence_details | SMap | S_parent | Sequence | R06C7 | |
| Flanking_sequences | agaatgtggaaaagatcaaatgctggagga | tgagaatcctccagcgacagtgacactttc | |||
| Mapping_target | R06C7 | ||||
| Type_of_mutation | Insertion | CTTCGGAGCAAAAA | |||
| Deletion | |||||
| PCR_product | ok3383_external | ||||
| ok3383_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00037468 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00000275 | |||
| Transcript | R06C7.8.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,frameshift_variant,stop_lost,intron_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | R06C7.8.1:c.348_956delinsCTTCGGAGCAAAAA | ||||
| HGVSp | CE06251:p.Glu116AspfsTer13 | ||||
| cDNA_position | 354-962 | ||||
| CDS_position | 348-956 | ||||
| Protein_position | 116-319 | ||||
| Intron_number | 3/7 | ||||
| Exon_number | 3-4/8 | ||||
| Codon_change | gaATTCAAAGATGTCCTGAAGTTGGCACGAGATCGTCTTTCCGAAAGAATAGAAATGACAGCAATTGAATCGGGATTTCGCGATTTGGTCGATGAATACTTCAATGGAGAATCTGGAGATATGTTCACACGACCGGATGAGACTATGGATCTTTTCAGATTCAATGCGGGTTCTAAGAAAAAGCGTCGCTCTTCGGTTTGCTTTTTGCAACACAATGTGCCTATAAATAACTCGGGAAAAGCTGCATTTGGACCAAAAAGTAAGTTTGAAAAAAAGTTATTATTCTCATTGGAAACTTACAGCCAAAACGGATCTTCGCCAGGCGTGTATCGACAGGCCAAACTATCATGGAATATCGATTGAGGAGTTTCGTTTTGCCAAATGGAAGGACACTTTCGGAGAAGATGTTGATGACGATTACCGAAAACGAAAAGACTCTGGTGTCGTTTTCGTGAAACATCAAGTCATTGATACCGACAGACAAGCCCGCGAAGAAGTTGAAAACCGATTCAACGCCAATCTAAATCCTAGAAGACGTCATCTTTCACCAGTCAGTGAGAAAACGGTTGATGATGAGGAGGAAAAGCGAAGCCGGATTTATTCGCCGCTGGTTGCAACGAAGGATGCTCACAGACCTGCACTTCGGAGCAAAATt/gaCTTCGGAGCAAAAAt | ||||
| Amino_acid_change | EFKDVLKLARDRLSERIEMTAIESGFRDLVDEYFNGESGDMFTRPDETMDLFRFNAGSKKKRRSSVCFLQHNVPINNSGKAAFGPKSKFEKKLLFSLETYSQNGSSPGVYRQAKLSWNID*GVSFCQMEGHFRRRC**RLPKTKRLWCRFRETSSH*YRQTSPRRS*KPIQRQSKS*KTSSFTSQ*ENG***GGKAKPDLFAAGCNEGCSQTCTSEQNX/DFGAKX | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
