WormBase Tree Display for Variation: WBVar00249442

WBVar00249442 Name: Public_name: tm394
    Other_name: C56A3.7b.1:c.162_370-130delinsA
      C56A3.7a.1:c.258_466-130delinsA
      C56A3.7d.1:c.73-72_256-130delinsA
    HGVSg: CHROMOSOME_V:g.13557503_13558341delinsA
  Sequence_details: SMap: S_parent: Sequence: C56A3
    Flanking_sequences: tcaagaagtaccaactcctcagagacgtag aaaacaaagaaaaacacttagtgttatcaa
    Mapping_target: C56A3
    Source_location: 7 CHROMOSOME_V 13557502 13558342 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: A
      Deletion
    PCR_product: tm394_external
      tm394_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 394
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00000302
    Transcript: C56A3.7a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C56A3.7a.1:c.258_466-130delinsA
        cDNA_position: 314-?
        CDS_position: 258-?
        Protein_position: 86-?
        Intron_number: 4-6/11
        Exon_number: 4-6/12
      C56A3.7d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C56A3.7d.1:c.73-72_256-130delinsA
        Intron_number: 1-3/7
        Exon_number: 2-3/8
      C56A3.7b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C56A3.7b.1:c.162_370-130delinsA
        cDNA_position: 162-?
        CDS_position: 162-?
        Protein_position: 54-?
        Intron_number: 2-4/8
        Exon_number: 2-4/9
    Interactor: WBInteraction000525135
      WBInteraction000525136
  Isolation: Mutagen: TMP/UV
  Genetics: Map: V
    Mapping_data: In_multi_point: 4176
  Description (2)
  Reference: WBPaper00028448
    WBPaper00046406
  Remark: 31168/31169-A-32007/32008 (839 bp deletion + 1 bp addition)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele