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WormBase Tree Display for Variation: WBVar00089737

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Name Class

WBVar00089737EvidencePaper_evidenceWBPaper00003632
NamePublic_namen766
Other_nameCE30992:p.Tyr796Ter
F44B9.6.1:c.2388T>A
HGVSgCHROMOSOME_III:g.8017886A>T
Sequence_detailsSMapS_parentSequenceF44B9
Flanking_sequencesttcaacttccatatccgttgctggaatcagtactcatcagaaacaaccaccggagaagat
Mapping_targetF44B9
Type_of_mutationSubstitutionatCurator_confirmedWBPerson4055
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00026879
WBStrain00026897
WBStrain00027237
WBStrain00027246
WBStrain00027359
LaboratoryMT
StatusLive
AffectsGeneWBGene00003021
TranscriptF44B9.6.1VEP_consequencestop_gained
VEP_impactHIGH
HGVScF44B9.6.1:c.2388T>A
HGVSpCE30992:p.Tyr796Ter
cDNA_position2391
CDS_position2388
Protein_position796
Exon_number9/12
Codon_changetaT/taA
Amino_acid_changeY/*
InteractorWBInteraction000051590
WBInteraction000051591
WBInteraction000051592
WBInteraction000051593
WBInteraction000051594
WBInteraction000051595
WBInteraction000051596
WBInteraction000051597
WBInteraction000051598
WBInteraction000051599
WBInteraction000051600
WBInteraction000051601
WBInteraction000051602
WBInteraction000051603
WBInteraction000051604
WBInteraction000051605
WBInteraction000051606
WBInteraction000051607
WBInteraction000051608
WBInteraction000051609
WBInteraction000051610
WBInteraction000051611
WBInteraction000051612
WBInteraction000051613
WBInteraction000051614
WBInteraction000051615
WBInteraction000051616
WBInteraction000051617
WBInteraction000051618
WBInteraction000500038
WBInteraction000500039
WBInteraction000502380
WBInteraction000503726
WBInteraction000519138
WBInteraction000519153
WBInteraction000519154
WBInteraction000519986
WBInteraction000519987
WBInteraction000519988
WBInteraction000519989
WBInteraction000557624
WBInteraction000557638
IsolationMutagenEMSPaper_evidenceWBPaper00003632
GeneticsInterpolated_map_positionIII-0.446789
Mapping_dataIn_multi_point (9)
In_pos_neg_data4346
DescriptionPhenotype_not_observedWBPhenotype:0000059Paper_evidenceWBPaper00038168
Curator_confirmedWBPerson712
RemarkAnimals do not show larval arrest at 24 or 26 deg C.Paper_evidenceWBPaper00038168
Curator_confirmedWBPerson712
WBPhenotype:0000886Person_evidenceWBPerson261
Curator_confirmedWBPerson712
RemarkWildtype alone; Muv in homozygotes with lin-8, lin-38 or lin-15(n767). Mosaic analysis indicates autonomous action in VPC.Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Ease_of_scoringES2_Difficult_to_scorePerson_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0001258Paper_evidenceWBPaper00027135
Curator_confirmedWBPerson557
ReferenceWBPaper00021002
WBPaper00014834
WBPaper00038168
WBPaper00027135
WBPaper00016177
WBPaper00014833
WBPaper00016178
WBPaper00010946
WBPaper00044900
RemarkVariation flanks and nucleotide change automatically updated to be on the positive strand to fix mapping and gff dumping issues.
[200224 mh6] reverse complemented/swapped the change and flanks to move the variation onto the plus strandCurator_confirmedWBPerson4055
MethodSubstitution_allele