WormBase Tree Display for Variation: WBVar00060827
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WBVar00060827 | Evidence | Paper_evidence | WBPaper00038208 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar00060827 | ||||
Other_name | haw43287 | |||||
haw143469 | ||||||
cewivar00196670 | ||||||
CE01237:p.Gly211Asp | ||||||
F09F7.5b.2:c.629G>A | ||||||
CE29259:p.Gly210Asp | ||||||
F09F7.5a.1:c.632G>A | ||||||
F09F7.5a.2:c.632G>A | ||||||
F09F7.5b.1:c.629G>A | ||||||
HGVSg | CHROMOSOME_III:g.5549019G>A | |||||
Sequence_details | SMap | S_parent | Sequence | F09F7 | ||
Flanking_sequences | gatcttggtggtgcttttagtttcg | tctcgatgattgcattccaattgtt | ||||
Mapping_target | F09F7 | |||||
Type_of_mutation | Substitution | G | A | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis elegans | ||||
Strain | WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | |||
WGS_Yanai | ||||||
Million_mutation_project_reanalysis | ||||||
Laboratory | RW | |||||
Person | WBPerson1562 | |||||
WBPerson4037 | ||||||
Analysis | WGS_Hawaiian_Waterston | |||||
WGS_Yanai | ||||||
Million_mutation_project_reanalysis | ||||||
History | Acquires_merge | WBVar00563334 | ||||
Status | Live | |||||
Affects | Gene | WBGene00017302 | ||||
Transcript | F09F7.5b.1 (12) | |||||
F09F7.5a.2 (12) | ||||||
F09F7.5a.1 (12) | ||||||
F09F7.5b.2 | VEP_consequence | missense_variant | ||||
VEP_impact | MODERATE | |||||
SIFT | 0.13 | tolerated_low_confidence | ||||
PolyPhen | 0.999 | probably_damaging | ||||
HGVSc | F09F7.5b.2:c.629G>A | |||||
HGVSp | CE29259:p.Gly210Asp | |||||
cDNA_position | 713 | |||||
CDS_position | 629 | |||||
Protein_position | 210 | |||||
Exon_number | 7/10 | |||||
Codon_change | gGt/gAt | |||||
Amino_acid_change | G/D | |||||
Reference | WBPaper00038208 | |||||
Remark | [20081124 db] this Variation was previously named hw43287 | |||||
Method | WGS_Hawaiian_Waterston |