WormBase Tree Display for Gene: WBGene00017302
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| WBGene00017302 | SMap | S_parent | Sequence | F09F7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | F09F7.5 | |||||||
| Molecular_name | F09F7.5a | ||||||||
| F09F7.5a.1 | |||||||||
| CE01237 | |||||||||
| F09F7.5b | |||||||||
| CE29259 | |||||||||
| F09F7.5a.2 | |||||||||
| F09F7.5b.1 | |||||||||
| F09F7.5b.2 | |||||||||
| Other_name | CELE_F09F7.5 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | F09F7.5 | ||||||||
| DB_info | Database | AceView | gene | 3G639 | |||||
| WormQTL | gene | WBGene00017302 | |||||||
| WormFlux | gene | WBGene00017302 | |||||||
| NDB | locus_tag | CELE_F09F7.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017302|UniProtKB=Q19275 | |||||||
| family | PTHR13502 | ||||||||
| NCBI | gene | 175764 | |||||||
| RefSeq | protein | NM_065785.8 | |||||||
| NM_001392099.1 | |||||||||
| TrEMBL | UniProtAcc | H2KZJ0 | |||||||
| Q19275 | |||||||||
| UniProt_GCRP | UniProtAcc | Q19275 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (72) | |||||||||
| Strain | WBStrain00036518 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (32) | |||||||||
| Structured_description | Concise_description | F09F7.5 encodes, by alternative splicing, three isoforms of an unfamiliar protein required for in conjunction with LIN-35 for normally large brood size, in conjunction with CLK-2 for normally rapid growth, and for normally short lifespan; F09F7.5 binds equally well to Cdc42 and Rac GTPases in vitro, probably through its N-terminal P21-Rho-binding domain; F09F7.5 has no obvious orthologs outside of Caenorhabditis species, and aside from its N-terminus is interspersed with low-complexity residues. | Paper_evidence | WBPaper00026643 | |||||
| WBPaper00029258 | |||||||||
| WBPaper00031036 | |||||||||
| WBPaper00032021 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 24 Jul 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable small GTPase binding activity. Predicted to be involved in regulation of Rho protein signal transduction and regulation of cell shape. Predicted to be located in cytoskeleton and plasma membrane. Is an ortholog of human CDC42SE1 (CDC42 small effector 1) and CDC42SE2 (CDC42 small effector 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F09F7.5a | |||||||
| F09F7.5b | |||||||||
| Corresponding_CDS_history | F09F7.5c:wp275 | ||||||||
| Corresponding_transcript | F09F7.5a.1 | ||||||||
| F09F7.5a.2 | |||||||||
| F09F7.5b.1 | |||||||||
| F09F7.5b.2 | |||||||||
| Other_sequence | CBC02919_1 | ||||||||
| CR03845 | |||||||||
| CRC05111_1 | |||||||||
| CJC16954_1 | |||||||||
| Associated_feature | WBsf645179 | ||||||||
| WBsf658956 | |||||||||
| WBsf992437 | |||||||||
| WBsf992438 | |||||||||
| WBsf1014905 | |||||||||
| WBsf1014906 | |||||||||
| WBsf224945 | |||||||||
| WBsf224946 | |||||||||
| Experimental_info | RNAi_result (13) | ||||||||
| Expr_pattern | Expr1028990 | ||||||||
| Expr1037436 | |||||||||
| Expr1148124 | |||||||||
| Expr2002354 | |||||||||
| Expr2020572 | |||||||||
| Drives_construct | WBCnstr00027408 | ||||||||
| Construct_product | WBCnstr00027408 | ||||||||
| Microarray_results (33) | |||||||||
| Expression_cluster (154) | |||||||||
| Interaction (82) | |||||||||
| Map_info | Positive | Positive_clone | F09F7 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | III | -1.55252 | |||||||
| Reference | WBPaper00032021 | ||||||||
| Method | Gene |
