WormBase Tree Display for Transcript: Y40C5A.4c
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| Y40C5A.4c | SMap | S_parent | Sequence | Y40C5A | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (11) | |||||
| DB_info | DB_remark | probable non-coding RNA | ||||
| Database | RNAcentral | URSid | URS000040895D | |||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Visible | Gene | WBGene00021497 | ||||
| Corresponding_PCR_product | cenix:113-f4 | |||||
| cenix:214-h2 | ||||||
| mv_Y40C5A.4 | ||||||
| mv_Y40C5A.5 | ||||||
| sjj_Y40C5A.a | ||||||
| sjj_Y40C5A.b | ||||||
| Corresponding_oligo_set (31) | ||||||
| RNAi_result | WBRNAi00018625 | |||||
| WBRNAi00036982 | ||||||
| WBRNAi00053175 | ||||||
| WBRNAi00000263 | ||||||
| WBRNAi00020444 | ||||||
| WBRNAi00056326 | ||||||
| WBRNAi00020445 | ||||||
| Microarray_results (35) | ||||||
| Brief_identification | non-coding Transcript Isoform | |||||
| Last_reviewed | 09 Dec 2013 00:00:00 | WBPerson4025 | ||||
| Remark | [131209 gw3] Created this non-coding transcript isoform to clearly indicate that the two halves of this locus are linked. There is ESt evidence that links across the large intron and the 5' end has a strong asymmetric RNASeq start signal while the 3' end has a strong asymmetric RNASeq end signal indicting that there is one major transcript produced. As there is a SL2 splice site it it possible that this is an operon with two genes that has become damaged by transposon inserts in the middle. | Accession_evidence | NDB | BJ123103 | ||
| FM249846 | ||||||
| Feature_evidence | WBsf184018 | |||||
| Properties | Transcript | ncRNA | ||||
| Isoform | Curator_confirmed | WBPerson4025 | ||||
| Method | non_coding_transcript |
