WormBase Tree Display for Transcript: Y111B2A.20a.1
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| Y111B2A.20a.1 | SMap | S_parent | Sequence | Y111B2A | |
|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 134 | ||
| 183 | 326 | ||||
| 399 | 669 | ||||
| 723 | 849 | ||||
| 1762 | 2315 | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Visible | Gene | WBGene00013740 | |||
| Variation (30) | |||||
| Matching_cDNA | EM_Nanopore_Li_227839 | Inferred_automatically | transcript_builder.pl | ||
| L1_Nanopore_Li_280185 | Inferred_automatically | transcript_builder.pl | |||
| L2_Nanopore_Roach_22019 | Inferred_automatically | transcript_builder.pl | |||
| adult_Nanopore_Roach_85785 | Inferred_automatically | transcript_builder.pl | |||
| YA_Nanopore_Li_236224 | Inferred_automatically | transcript_builder.pl | |||
| adult_Nanopore_Roach_31895 | Inferred_automatically | transcript_builder.pl | |||
| OSTF175D8_1 | Inferred_automatically | transcript_builder.pl | |||
| YA_Nanopore_Li_306862 | Inferred_automatically | transcript_builder.pl | |||
| YA_Nanopore_Li_176017 | Inferred_automatically | transcript_builder.pl | |||
| male_Nanopore_Roach_25406 | Inferred_automatically | transcript_builder.pl | |||
| YA_Nanopore_Li_220972 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Roach_101129 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Li_200010 | Inferred_automatically | transcript_builder.pl | |||
| yk1505d04.3 | Inferred_automatically | transcript_builder.pl | |||
| FN886298 | Inferred_automatically | transcript_builder.pl | |||
| male_Nanopore_Roach_125382 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Roach_82561 | Inferred_automatically | transcript_builder.pl | |||
| FN883844 | Inferred_automatically | transcript_builder.pl | |||
| EM_Nanopore_Li_322472 | Inferred_automatically | transcript_builder.pl | |||
| YA_Nanopore_Li_221909 | Inferred_automatically | transcript_builder.pl | |||
| EM_Nanopore_Li_170331 | Inferred_automatically | transcript_builder.pl | |||
| young_adult_Nanopore_Roach_25250 | Inferred_automatically | transcript_builder.pl | |||
| L3_Nanopore_Roach_21422 | Inferred_automatically | transcript_builder.pl | |||
| L3_Nanopore_Roach_77587 | Inferred_automatically | transcript_builder.pl | |||
| adult_Nanopore_Roach_21482 | Inferred_automatically | transcript_builder.pl | |||
| L4_Nanopore_Roach_14267 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Li_96526 | Inferred_automatically | transcript_builder.pl | |||
| L3_Nanopore_Roach_20895 | Inferred_automatically | transcript_builder.pl | |||
| EM_Nanopore_Li_243580 | Inferred_automatically | transcript_builder.pl | |||
| OSTR175D8_1 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Roach_21490 | Inferred_automatically | transcript_builder.pl | |||
| yk1505d04.5 | Inferred_automatically | transcript_builder.pl | |||
| elegans_PE_SS_GG7062|c1_g1_i1 | Inferred_automatically | transcript_builder.pl | |||
| Corresponding_CDS | Y111B2A.20a | ||||
| Corresponding_PCR_product | cenix:80-d12 | ||||
| mv_Y111B2E.b | |||||
| sjj2_Y111B2A.20 | |||||
| Corresponding_oligo_set (19) | |||||
| RNAi_result (13) | |||||
| Microarray_results (20) | |||||
| SAGE_tag | SAGE:aagcaattgc | Strand | Antisense | ||
| SAGE:aatcatccgc | Strand | Sense | |||
| Unambiguously_mapped | |||||
| SAGE:agacgccaca | Strand | Sense | |||
| Unambiguously_mapped | |||||
| SAGE:aagagcaccgatattat | Strand | Antisense | |||
| SAGE:aagcaattgcgagcccg | Strand | Antisense | |||
| SAGE:agacgccacatcatcac | Strand | Sense | |||
| Unambiguously_mapped | |||||
| SAGE:aagagcaccg | Strand | Antisense | |||
| SAGE:gttttttggc | Strand | Antisense | |||
| SAGE:aatcatccgctctctgg | Strand | Sense | |||
| Unambiguously_mapped | |||||
| RNASeq_FPKM (74) | |||||
| Properties | Transcript | mRNA | |||
| Associated_feature | WBsf015235 | ||||
| WBsf247409 | |||||
| Method | Coding_transcript |
