WormBase Tree Display for Sequence: ZK1307
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| ZK1307 | DNA | ZK1307 | 31001 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child | WBGene00014250 | 24381 | 25852 | |
| WBGene00014245 | 28842 | 27999 | ||||
| WBGene00014244 | 30470 | 29235 | ||||
| WBGene00014247 | 26690 | 25849 | ||||
| WBGene00305939 | 27415 | 26376 | ||||
| WBGene00001510 | 19356 | 15046 | ||||
| WBGene00014246 | 27909 | 27198 | ||||
| WBGene00305940 | 27553 | 26519 | ||||
| WBGene00005026 | 21868 | 24257 | ||||
| WBGene00014248 | 11490 | 15112 | ||||
| CDS_child (193) | ||||||
| Transcript (14) | ||||||
| PCR_product (31) | ||||||
| Allele (519) | ||||||
| Oligo_set | Aff_ZK1307.1 | 30077 | 29321 | |||
| Aff_ZK1307.2 | 28761 | 28055 | ||||
| Aff_ZK1307.3 | 27857 | 27269 | ||||
| Aff_ZK1307.4 | 26627 | 25921 | ||||
| Aff_ZK1307.5 | 23424 | 24114 | ||||
| Aff_ZK1307.6 | 16748 | 15885 | ||||
| Aff_ZK1307.7 | 13291 | 14512 | ||||
| Aff_ZK1307.8 | 648 | 1304 | ||||
| Aff_ZK1307.9 | 24990 | 25777 | ||||
| Feature_object (311) | ||||||
| Feature_data | ZK1307:Polysome | 1 | 31001 | |||
| ZK1307:TranscriptionallyActiveRegion | 1 | 31001 | ||||
| ZK1307:ChIPSeqTF | 1 | 31001 | ||||
| ZK1307:TRF | 1 | 31001 | ||||
| ZK1307:Dust | 1 | 31001 | ||||
| ZK1307:inverted | 1 | 31001 | ||||
| Homol_data (18) | ||||||
| Structure | From | Source | CHROMOSOME_II | |||
| Overlap_right | ZK1320 | 30894 | ||||
| Overlap_left | T15H9 | |||||
| Clone_left_end | ZK1320 | 30894 | ||||
| Clone_right_end | T15H9 | 4631 | ||||
| DB_info | Database | EMBL | NDB_AC | Z47358 | ||
| NDB_SV | Z47358.1 | |||||
| DB_remark | Repeat regions contain 33 copies of the 40mer RcC9 (6750..8060); 22 copies of the 35mer Rc35 (8061..8840); 22 copies of 2 15 mers (11 of each) being variations of RcD1 (8841..9160); 3 copies of RcC9 variation 40mer (9170..9300); 2 copies of Rc123 (9380..9550). | |||||
| The region (7170..8470) was not present in the cosmid but determined from PCR reactions carried out directly from the genome | ||||||
| Repeat types are defined in Nacleno et al. J. Mol. Biol. 1992 226:159-168 | ||||||
| Repeat regions were not completely sequenced on both strands | ||||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Berks M | ||||
| From_laboratory | HX | |||||
| Date_directory | 941022 | |||||
| Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00000001 | |||||
| Visible | Clone | ZK1307 | ||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | 07805f68f3155b2ffcf00fe590f64f0d | ||||
| Status | Finished | 22 Oct 1994 00:00:00 | ||||
| Submitted | 07 Jan 1995 00:00:00 | |||||
| Annotated | 06 Jan 1995 00:00:00 | |||||
| Map | Sequence-II | Ends | Left | 5705 | ||
| Right | 5719 | |||||
| Interpolated_map_position | II | 1.62171 | ||||
| Assembly_tags | annotation | 4996 | 4996 | one clone has T at this position rather than G (2 clones) | ||
| this clone has a T rather than a G | ||||||
| 6610 | 6610 | one clone (xc35g3) missing a T in this position | ||||
| 30894 | 30917 | ZK1320 | ||||
| cosmid vector | 30894 | 30898 | ||||
| 4609 | 4631 | T15H9 | ||||
| Method | Genomic_canonical |
