WormBase Tree Display for Sequence: ZK1128
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| ZK1128 | DNA | ZK1128 | 27831 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child | WBGene00198108 | 22208 | 22299 | |
| WBGene00014227 | 3823 | 2210 | ||||
| WBGene00044072 | 9844 | 11988 | ||||
| WBGene00197208 | 25974 | 25844 | ||||
| WBGene00014232 | 13246 | 21474 | ||||
| WBGene00014229 | 7981 | 6030 | ||||
| WBGene00014228 | 4099 | 5929 | ||||
| WBGene00305938 | 9156 | 8932 | ||||
| WBGene00014230 | 9211 | 8028 | ||||
| WBGene00014234 | 2121 | 1016 | ||||
| CDS_child (261) | ||||||
| Transcript (15) | ||||||
| Nongenomic | yk174a12 | 11292 | 11914 | |||
| yk375c3 | 1232 | 2084 | ||||
| PCR_product (35) | ||||||
| Allele (405) | ||||||
| Oligo_set | Aff_ZK1128.1 | 2616 | 1289 | |||
| Aff_ZK1128.2 | 5168 | 5767 | ||||
| Aff_ZK1128.3 | 6996 | 6030 | ||||
| Aff_ZK1128.4 | 8868 | 8105 | ||||
| Aff_ZK1128.5 | 10746 | 11784 | ||||
| Aff_ZK1128.6 | 19976 | 21287 | ||||
| Aff_ZK1128.7 | 26193 | 28032 | ||||
| Feature_object (328) | ||||||
| Feature_data | ZK1128:Polysome | 1 | 27831 | |||
| ZK1128:TranscriptionallyActiveRegion | 1 | 27831 | ||||
| ZK1128:ChIPSeqTF | 1 | 27831 | ||||
| ZK1128:TRF | 1 | 27831 | ||||
| ZK1128:Dust | 1 | 27831 | ||||
| ZK1128:inverted | 1 | 27831 | ||||
| Homol_data (21) | ||||||
| Structure | From | Source | CHROMOSOME_III | |||
| Overlap_right | K08E5 | 27731 | ||||
| Overlap_left | T16H12 | |||||
| Clone_left_end | K08E5 | 27731 | ||||
| Clone_right_end | T16H12 | 322 | ||||
| DB_info | Database | EMBL | NDB_AC | Z47357 | ||
| NDB_SV | Z47357.2 | |||||
| DB_remark | [121025] Sequence correction WBsf268516 : Deletion C-1 bases @ 20835 | |||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Berks M | ||||
| From_laboratory | HX | |||||
| Date_directory | 950103 | |||||
| Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00000001 | |||||
| Visible | Clone | ZK1128 | ||||
| Reference | WBPaper00012645 | |||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | f9c24e7354c1f4a362e2f3e96d7ac68a | ||||
| Status | Finished | 03 Jan 1995 00:00:00 | ||||
| Submitted | 07 Jan 1995 00:00:00 | |||||
| Annotated | 05 Jan 1995 00:00:00 | |||||
| Map | Sequence-III | Ends | Left | 5237 | ||
| Right | 5261 | |||||
| Interpolated_map_position | III | 1.87594 | ||||
| Assembly_tags | annotation | 2 | 8 | Start analysis here to overlap with T16H12 submitted data by 100 bases | ||
| 318 | 322 | End of T16H12 | ||||
| 12500 | 12629 | very poor data across this region covered only by sequence from PCR products (from cosmid) | ||||
| 16171 | 16214 | These 43bp appear to be deleted in a sub-species of the cosmid used in sequencing. Genomic PCR confirms that these bases are present in genomic DNA. | ||||
| 19754 | 19774 | Number of C's estimated to be 21 from one terminator read only. No other good reads to confirm this | ||||
| 22182 | 22209 | No good data on + strand for approx 30bp but good data on other strand. Adjacent to a (TC)n repeat : about 40 copies (i.e. 80bp long) | ||||
| 27731 | 27741 | |||||
| Method | Genomic_canonical |
