WormBase Tree Display for Sequence: Y81G3A
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| Y81G3A | DNA | Y81G3A | 20303 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child | WBGene00013590 | 4079 | 2376 | |
| WBGene00195150 | 2656 | 1921 | ||||
| WBGene00013591 | 4317 | 11654 | ||||
| WBGene00014953 | 1060 | 1380 | ||||
| WBGene00013592 | 11576 | 14399 | ||||
| WBGene00000661 | 18428 | 16162 | ||||
| CDS_child (109) | ||||||
| Transcript | Y81G3A.1.1 | 4079 | 2376 | |||
| Y81G3A.2.1 | 1060 | 1380 | ||||
| Y81G3A.3a.1 | 4317 | 11654 | ||||
| Y81G3A.3b.1 | 4322 | 11654 | ||||
| Y81G3A.4a.1 | 11576 | 14399 | ||||
| Y81G3A.4b.1 | 11764 | 14399 | ||||
| Y81G3A.5a.1 | 18428 | 16162 | ||||
| Y81G3A.5b.1 | 16755 | 16162 | ||||
| Y81G3A.6.1 | 2656 | 1921 | ||||
| Pseudogene | Y81G3A.2:wp215 | 979 | 2077 | |||
| Nongenomic | yk232h10 | 519 | 818 | |||
| PCR_product (17) | ||||||
| Allele (507) | ||||||
| Feature_object (132) | ||||||
| Feature_data | Y81G3A:Polysome | 1 | 20303 | |||
| Y81G3A:TranscriptionallyActiveRegion | 1 | 20303 | ||||
| Y81G3A:ChIPSeqTF | 1 | 20303 | ||||
| Y81G3A:TRF | 1 | 20303 | ||||
| Y81G3A:Dust | 1 | 20303 | ||||
| Y81G3A:inverted | 1 | 20303 | ||||
| Homol_data (19) | ||||||
| Structure | From | Source | CHROMOSOME_II | |||
| Overlap_right | F29C12 | 20204 | ||||
| Overlap_left | F42G4 | |||||
| Clone_left_end | F29C12 | 20204 | ||||
| Y81G3A | 1 | |||||
| Clone_right_end | F42G4 | 100 | ||||
| Y81G3A | 20303 | |||||
| DB_info | Database | EMBL | NDB_AC | AL034543 | ||
| NDB_SV | AL034543.2 | |||||
| Secondary_accession | AL021152 | |||||
| DB_remark | [121025] Sequence correction: SNP 0 bases @ 10250 | |||||
| [121025] Sequence correction: SNP 0 bases @ 12462 | ||||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Wallis JM | ||||
| From_laboratory | HX | |||||
| Date_directory | 981211 | |||||
| Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00000001 | |||||
| Visible | Clone | Y81G3A | ||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | 8621b3fe5fbb82c46aea71aebf7c64ff | ||||
| Status | Finished | 11 Dec 1998 00:00:00 | ||||
| Submitted | 17 Dec 1998 00:00:00 | |||||
| Annotated | 01 Jan 1980 00:00:00 | |||||
| Map | Sequence-II | Ends | Left | 7574 | ||
| Right | 7617 | |||||
| Interpolated_map_position | II | 14.1266 | ||||
| Assembly_tags | Finished Left | 1 | 4 | Y81G3A | ||
| Clone right end | 97 | 100 | F42G4 | |||
| annotation | 10600 | 10659 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - Sequence from uni-directional primer reads only. | |||
| 15537 | 15600 | First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Sequence from a single pUC clone formingpart of one arm and part of the loop of an inverted repeat. | ||||
| 15651 | 15658 | First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Sequence from a single pUC clone. Part of one arm of an inverted repeat. | ||||
| 18539 | 18614 | First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[x] OtherAdd a comment here -Region covered by reads in one directiononly. The terminator read is of poor quality. | ||||
| 19861 | 19861 | First select a Feature -[x] Unsure[ ] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[x] OtherAdd a comment here -Primer reads in both directions read T, while none of the terminator readscall this T. | ||||
| Finished Right | 20300 | 20303 | Y81G3A | |||
| Clone left end | 20204 | 20207 | F29C12 | |||
| Method | Genomic_canonical |
