WormBase Tree Display for Sequence: D1053
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| D1053 | DNA | D1053 | 17411 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child | WBGene00008369 | 5549 | 3421 | |
| WBGene00202102 | 615 | 749 | ||||
| WBGene00001790 | 9685 | 8013 | ||||
| WBGene00008367 | 9900 | 10640 | ||||
| WBGene00196924 | 1996 | 1860 | ||||
| WBGene00199715 | 1860 | 1996 | ||||
| CDS_child (104) | ||||||
| Transcript | D1053.5 | 1996 | 1860 | |||
| D1053.6 | 1860 | 1996 | ||||
| D1053.7 | 615 | 749 | ||||
| D1053.1.1 | 9685 | 8013 | ||||
| D1053.2.1 | 9900 | 10640 | ||||
| D1053.3.1 | 15451 | 11335 | ||||
| D1053.4.1 | 5549 | 3421 | ||||
| PCR_product (11) | ||||||
| Allele (239) | ||||||
| Oligo_set | Aff_D1053.1 | 9500 | 8243 | |||
| Aff_D1053.2 | 9939 | 10662 | ||||
| Aff_D1053.3 | 15415 | 12937 | ||||
| Feature_object (183) | ||||||
| Feature_data | D1053:Polysome | 1 | 17411 | |||
| D1053:TranscriptionallyActiveRegion | 1 | 17411 | ||||
| D1053:ChIPSeqTF | 1 | 17411 | ||||
| D1053:TRF | 1 | 17411 | ||||
| D1053:Dust | 1 | 17411 | ||||
| D1053:inverted | 1 | 17411 | ||||
| Homol_data (16) | ||||||
| Structure | From | Source | CHROMOSOME_X | |||
| Overlap_right | C40H5 | 17212 | ||||
| Overlap_left | C44C10 | |||||
| Clone_right_end | C44C10 | 63 | ||||
| DB_info | Database | EMBL | NDB_AC | Z66560 | ||
| NDB_SV | Z66560.2 | |||||
| DB_remark | [981006 dl] : Cosmid flipped | |||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Kershaw JK | ||||
| From_laboratory | HX | |||||
| Date_directory | 981005 | |||||
| Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00000001 | |||||
| Visible | Clone | D1053 | ||||
| Remark | Cosmid contains 2 EGF-like prosites (Positions -5838 and -14925 reverse strand). No obviously sensible gene can be contructed to utilise these domains. | |||||
| [rd 990419] truncated to a 200bp overlap with C40H5. This removed a misalignment to C40H5, and some duplicate gene predictions. | ||||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | 4318406554508cd97a1245db9227cb2f | ||||
| Status | Finished | 05 Oct 1998 00:00:00 | ||||
| Submitted | 04 Nov 1995 00:00:00 | |||||
| Annotated | 03 Nov 1995 00:00:00 | |||||
| Map | Sequence-X | Ends | Left | 6376 | ||
| Right | 6384 | |||||
| Interpolated_map_position | X | 6.53123 | ||||
| Assembly_tags | cosmid vector | 60 | 63 | |||
| 23063 | 23052 | |||||
| 25630 | 25733 | pJB8 | ||||
| 43168 | 43165 | |||||
| Clone right end | 63 | 60 | C44C10 | |||
| 43168 | 43165 | D1053 | ||||
| Finished Left | 1 | 5 | D1053 | |||
| Method | Genomic_canonical |
