WormBase Tree Display for Sequence: F08G5
expand all nodes | collapse all nodes | view schema
| F08G5 | DNA | F08G5 | 32782 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child | WBGene00200755 | 11673 | 11762 | |
| WBGene00174925 | 17455 | 17435 | ||||
| WBGene00008581 | 4226 | 5982 | ||||
| WBGene00014314 | 11079 | 11008 | ||||
| WBGene00196087 | 23484 | 23571 | ||||
| WBGene00199846 | 20284 | 20417 | ||||
| WBGene00023502 | 26399 | 28794 | ||||
| WBGene00008584 | 29592 | 31995 | ||||
| WBGene00201477 | 12322 | 12177 | ||||
| WBGene00199784 | 10322 | 10465 | ||||
| WBGene00014315 | 10772 | 10701 | ||||
| WBGene00198430 | 19479 | 19282 | ||||
| WBGene00199029 | 10683 | 10778 | ||||
| WBGene00197689 | 19261 | 19399 | ||||
| WBGene00197020 | 23571 | 23484 | ||||
| WBGene00008580 | 2684 | 4229 | ||||
| WBGene00014313 | 11757 | 11685 | ||||
| WBGene00000704 | 22275 | 21264 | ||||
| WBGene00195407 | 8146 | 8294 | ||||
| WBGene00008583 | 14442 | 26395 | ||||
| WBGene00201057 | 20479 | 20284 | ||||
| WBGene00201775 | 10933 | 11084 | ||||
| WBGene00008582 | 11345 | 6680 | ||||
| WBGene00196906 | 13218 | 13362 | ||||
| CDS_child (233) | ||||||
| Transcript (34) | ||||||
| Nongenomic | yk173e12 | 145 | 2375 | |||
| yk204e8 | 21265 | 21564 | ||||
| PCR_product (22) | ||||||
| Allele (557) | ||||||
| Oligo_set | Aff_F08G5.1 | 3394 | 4101 | |||
| Aff_F08G5.2 | 5100 | 5943 | ||||
| Aff_F08G5.3 | 8473 | 6848 | ||||
| Aff_F08G5.4 | 21905 | 21306 | ||||
| Aff_F08G5.5 | 27655 | 28762 | ||||
| Aff_F08G5.6 | 30240 | 31951 | ||||
| Aff_F28D1.10 | 1502 | 2199 | ||||
| Feature_object (254) | ||||||
| Feature_data | F08G5:Polysome | 1 | 32782 | |||
| F08G5:TranscriptionallyActiveRegion | 1 | 32782 | ||||
| F08G5:ChIPSeqTF | 1 | 32782 | ||||
| F08G5:TRF | 1 | 32782 | ||||
| F08G5:Dust | 1 | 32782 | ||||
| F08G5:inverted | 1 | 32782 | ||||
| Homol_data (19) | ||||||
| Structure | From | Source | CHROMOSOME_IV | |||
| Overlap_right | C25G4 | 32678 | ||||
| Overlap_left | F28D1 | |||||
| Clone_left_end | F08G5 | 1 | ||||
| C26C6 | 32678 | |||||
| Clone_right_end | F28D1 | 725 | ||||
| DB_info | Database | EMBL | NDB_AC | Z70682 | ||
| NDB_SV | Z70682.3 | |||||
| DB_remark | [100415] Sequence correction: deletion -1 bases atgcttggTactggatt @ 27377 | |||||
| [121025] Sequence correction WBsf268126 : Deletion C-1 bases @ 10138 | ||||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Steward CA | ||||
| From_laboratory | HX | |||||
| Date_directory | 100415 | |||||
| Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00000001 | |||||
| Visible | Clone | F08G5 | ||||
| Reference | WBPaper00015325 | |||||
| Properties (3) | ||||||
| Map | Sequence-IV | Ends | Left | 6441 | ||
| Right | 6458 | |||||
| Interpolated_map_position | IV | 5.91834 | ||||
| Assembly_tags | Clone left end | 1 | 4 | F08G5 | ||
| 32678 | 32681 | C25G4 | ||||
| Finished Left | 1 | 1 | ||||
| Clone right end | 722 | 725 | F28D1 | |||
| annotation | 24191 | 24193 | best-guess editing due to unclear sequence as a result of an inverted repeat. All subsequent ?annotation? tags over the next 100 bases mark similarly unclear calls | |||
| 24195 | 24197 | |||||
| 24324 | 24324 | last unclear base. All calls after this region are fine | ||||
| 24234 | 24238 | |||||
| 24260 | 24262 | |||||
| 24253 | 24253 | |||||
| 24263 | 24270 | |||||
| Finished Right | 32782 | 32782 | ||||
| Method | Genomic_canonical |
