WormBase Tree Display for Gene: WBGene00008584
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WBGene00008584 | SMap | S_parent | Sequence | F08G5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | irg-4 | Person_evidence | WBPerson9709 | |||||
Sequence_name | F08G5.6 | ||||||||
Molecular_name | F08G5.6 | ||||||||
F08G5.6.1 | |||||||||
CE05576 | |||||||||
Other_name | CELE_F08G5.6 | Accession_evidence | NDB | BX284604 | |||||
Public_name | irg-4 | ||||||||
DB_info | Database | AceView | gene | 4N201 | |||||
WormQTL | gene | WBGene00008584 | |||||||
WormFlux | gene | WBGene00008584 | |||||||
NDB | locus_tag | CELE_F08G5.6 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00008584|UniProtKB=Q19223 | |||||||
family | PTHR21447 | ||||||||
NCBI | gene | 184206 | |||||||
RefSeq | protein | NM_069973.7 | |||||||
TREEFAM | TREEFAM_ID | TF315647 | |||||||
TrEMBL | UniProtAcc | Q19223 | |||||||
UniProt_GCRP | UniProtAcc | Q19223 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 28 Sep 2016 15:57:39 | WBPerson2970 | Name_change | CGC_name | irg-4 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | irg | ||||||||
Allele (84) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00063974 | ||||||||
00063975 | |||||||||
00063976 | |||||||||
00063977 | |||||||||
00063978 | |||||||||
00063979 | |||||||||
Ortholog (31) | |||||||||
Paralog (17) | |||||||||
Structured_description | Concise_description | F08G5.6 encodes a CUB-like domain-containing protein; F08G5.6 is involved in the transcriptional, innate immune response towards several different bacterial pathogens; an F08G5.6::gfp promoter fusion is expressed in the intestine and in head neurons; F08G5.6 expression is positively regulated in the intestine by the ELT-2 GATA transcription factor. | Paper_evidence | WBPaper00028482 | |||||
WBPaper00029438 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 19 Feb 2014 00:00:00 | ||||||||
Automated_description | Involved in defense response to Gram-negative bacterium and innate immune response. Expressed in head neurons and intestine. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F08G5.6 | |||||||
Corresponding_transcript | F08G5.6.1 | ||||||||
Associated_feature | WBsf034363 | ||||||||
WBsf646476 | |||||||||
WBsf229294 | |||||||||
WBsf229295 | |||||||||
Experimental_info | RNAi_result | WBRNAi00012932 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00044057 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00095405 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00065094 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00095422 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00030673 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00095216 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr4725 | ||||||||
Expr1018962 | |||||||||
Expr1148022 | |||||||||
Expr2012819 | |||||||||
Expr2031058 | |||||||||
Drives_construct | WBCnstr00012202 | ||||||||
WBCnstr00019358 | |||||||||
WBCnstr00032855 | |||||||||
Construct_product | WBCnstr00012202 | ||||||||
WBCnstr00015896 | |||||||||
WBCnstr00032855 | |||||||||
Microarray_results (17) | |||||||||
Expression_cluster (397) | |||||||||
Interaction (31) | |||||||||
WBProcess | WBbiopr:00000039 | ||||||||
Map_info | Positive | Positive_clone | F08G5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | IV | 5.92969 | |||||||
Reference (16) | |||||||||
Method | Gene |