WormBase Tree Display for Sequence: C02C2

C02C2 DNA: C02C2 20493
  SMap: S_child: Gene_child: WBGene00015332 11533 14946
        WBGene00015333 3040 332
        WBGene00000845 4241 6489
        WBGene00015334 16654 14928
      CDS_child: C02C2.1 11539 14614
        C02C2.3 4321 6445
        C02C2.4 2883 394
        C02C2.4:wp186 2820 394
        C02C2.5 16591 15018
        C02C2.5:wp102 16591 14971
        C02C2.5:wp242 16591 15018
        C02C2.6:wp64 20423 19194
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g56n11_x16_III_p 11539 14611
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g125_x16_III_p 4569 6121
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g152_x16_III_m 15342 15208
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g163_x16_III_m 2024 1797
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g153_x16_III_m 835 550
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g31n11_x16_III_p 1232 4121
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g162_x16_III_m 16293 16168
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g156_x16_III_m 16164 15955
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g92_x16_III_p 13349 14120
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g157_x16_III_p 4415 4533
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g170_x16_III_p 14444 14611
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g169_x16_III_m 16643 16572
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g122_x16_III_p 11539 12635
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g146_x16_III_p 5201 5802
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g140_x16_III_p 12798 13083
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g155_x16_III_p 13117 13294
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g91n11_x16_III_m 16643 16572
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g9n11_x16_III_p 11797 11979
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g80_x16_III_p 4569 6226
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g4n11e9k89_x16_III_p 14022 14159
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g4n11_x16_III_p 11539 14611
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g137_x16_III_m 15491 15429
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g107_x16_III_m 15410 15021
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g150_x16_III_p 6365 6430
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g133_x16_III_m 16293 15904
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g167_x16_III_m 1563 1325
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g72_x16_III_p 11600 11884
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g131_x16_III_p 13204 13968
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g153_x16_III_p 14094 14542
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g123_x16_III_m 1822 1626
        RNASEQ_embryo_him-8_20dC_post-L1_g147_x16_III_p 4378 4431
        RNASEQ_embryo_him-8_20dC_post-L1_g139_x16_III_p 5201 5287
        RNASEQ_embryo_him-8_20dC_post-L1_g102_x16_III_p 5333 6058
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g98n11_x16_III_p 3959 4242
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g53n11_x16_III_p 11539 14611
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g210_x16_III_m 15783 15396
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g170_x16_III_m 16164 15997
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g53n11e2k62_x16_III_p 11795 12039
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g113_x16_III_p 4569 6421
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g164_x16_III_m 15321 15021
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g144n11_x16_III_m 16591 16409
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g180_x16_III_m 2528 2421
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g215_x16_III_m 2028 1930
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g196_x16_III_m 769 427
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g41n11_x16_III_m 15439 14600
        RNASEQ_L4_soma_JK1107_no_DNaseI_g194_x16_III_m 2024 1881
        RNASEQ_L4_soma_JK1107_no_DNaseI_g92_x16_III_p 4569 6238
        RNASEQ_L4_soma_JK1107_no_DNaseI_g146_x16_III_m 15783 15021
        RNASEQ_L4_soma_JK1107_no_DNaseI_g40n11_x16_III_p 11539 14611
        RNASEQ_L4_soma_JK1107_no_DNaseI_g133_x16_III_p 6365 6442
        RNASEQ_L4_soma_JK1107_no_DNaseI_g152_x16_III_m 15930 15796
        RNASEQ_L4_soma_JK1107_no_DNaseI_g71n11_x16_III_m 16591 16315
        RNASEQ_L4_soma_JK1107_no_DNaseI_g126_x16_III_m 16293 15964
        RNASEQ_L4_soma_JK1107_no_DNaseI_g201_x16_III_m 1569 1349
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g93_x16_III_p 4569 6442
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g50n11_x16_III_p 11539 14611
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g66n11_x16_III_m 16591 15021
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g133_x16_III_m 895 701
        RNASEQ_early_embryo_g106_x16_III_p 4321 6406
        RNASEQ_early_embryo_g112_x16_III_m 16591 15021
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g114n11_x16_III_p 11539 11634
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g101n11_x16t1_III_m 16591 15021
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g91_x16_III_p 4321 6442
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g106_x16_III_p 11815 14611
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g143_x16_III_m 835 692
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g86_x16_III_p 4321 6442
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g101_x16_III_m 2883 418
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g99_x16t1_III_m 16293 15021
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g79_x16_III_p 11797 14611
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g97s1k61_x16_III_m 2690 397
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g87_x16_III_p 4321 6442
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g56n11_x16_III_m 16591 15021
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g103_x16_III_m 3020 2934
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g104_x16_III_m 2495 397
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g55n11_x16_III_p 11539 14611
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g122_x16_III_m 16293 15172
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g149_x16_III_m 15160 15004
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g29n11_x16_III_p 11539 14611
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g114_x16_III_m 2883 2289
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g84_x16_III_p 4569 6442
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g111_x16_III_m 2159 1842
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g106_x16_III_m 1602 397
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g56n11_x16_III_p 1232 4121
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g89_x16_III_p 8402 8946
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g133_x16_III_p 13117 13611
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g142_x16_III_m 15783 15054
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g185_x16_III_m 2330 2184
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g152_x16_III_p 12906 13004
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g119_x16_III_p 5623 6292
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g106_x16_III_p 4569 5353
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g123_x16_III_m 16122 15904
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g116_x16_III_p 14094 14611
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g83n11_x16_III_m 16591 16180
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g120_x16_III_m 2883 2409
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g230_x16_III_p 12537 12629
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g129_x16_III_m 895 737
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g138_x16_III_m 10086 9979
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g84n11_x16_III_p 16948 19014
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g175_x16_III_p 4569 5024
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g148_x16_III_p 5333 5992
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g206_x16_III_m 2882 2612
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g205_x16_III_m 15243 15024
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g105n11_x16_III_m 16643 16572
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g59n11_x16_III_p 11539 14611
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g184_x16_III_m 1249 1135
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g114_x16_III_m 4161 3372
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g172_x16_III_p 5201 5293
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g148_x16_III_p 5623 6055
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g203_x16_III_m 16293 16243
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g54n11_x16_III_p 11539 14611
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g130n11_x16_III_m 16591 16469
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g137_x16_III_p 4381 4514
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g176_x16_III_m 15434 15316
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g119n11_x16_III_m 16591 16439
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g180_x16_III_m 15207 15160
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g135_x16_III_m 16164 15937
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g63n11_x16_III_p 11539 14611
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g105_x16_III_p 5201 6370
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g137_x16_III_m 2914 2629
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g131_x16_III_p 4569 5096
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g120_x16_III_m 15491 15211
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g140_x16_III_m 2100 1897
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g145_x16_III_m 895 734
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g45n11_x16_III_p 1232 4121
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g49n11_x16_III_m 15439 14600
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g114_x16_III_p 12906 14611
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g193_x16_III_p 4569 4673
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g82n11_x16_III_p 11539 12899
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g102n11_x16_III_m 16591 16297
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g172_x16_III_m 15783 15453
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g168_x16_III_m 15345 15021
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g137_x16_III_p 5201 6067
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g195_x16_III_m 16293 16243
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g108_x16_III_p 4321 6379
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g165_x16_III_m 2471 2358
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g126_x16_III_m 2159 1836
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g101_x16_III_m 2613 2491
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g131_x16_III_m 16293 15063
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g81_x16_III_p 11797 14611
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g111_x16_III_m 1602 692
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g194_x16_III_m 15485 15423
        C02C2.gc1 2820 394
        C02C2.gc2 3498 8155
        C02C2.gc3 11539 14614
        C02C2.gc4 16591 15018
        ZK652.gc11 1963 394
        ContigIII.elegans.jigsaw.1515.mRNA1515 11489 14858
        ContigIII.elegans.jigsaw.1516.mRNA1516 18296 14930
        ContigIII.elegans.jigsaw.1514.mRNA1514 4219 6483
        ContigIII.elegans.jigsaw.1513.mRNA1513 3038 336
        AG1201_C02C2.4.T2 2690 394
        AG1201_C02C2.4.T1 2883 394
        AG1201_RIT3P.1521.T1 3498 3668
        AG1201_C02C2.3.T1 4321 6445
        AG1201_C02C2.1.T3 11428 14614
        AG1201_C02C2.1.T1 11539 14614
        AG1201_C02C2.5.T4 16164 15018
        AG1201_C02C2.5.T5 16164 15018
        AG1201_C02C2.5.T1 16591 15018
        AG1201_RIT3P.711.T1 15282 15368
      Transcript: C02C2.1.1 11533 14946
        C02C2.3.1 4241 6489
        C02C2.4.1 3040 332
        C02C2.5.1 16654 14928
      Nongenomic: yk347c11 13542 14793
      PCR_product (19)
      Allele (213)
      Oligo_set: Aff_C02C2.1 13626 14616
        Aff_C02C2.3 5346 6314
        Aff_C02C2.5 15953 14973
        Aff_C02C2.6 20426 19196
      Feature_object (153)
      Feature_data: C02C2:Polysome 1 20493
        C02C2:TranscriptionallyActiveRegion 1 20493
        C02C2:ChIPSeqTF 1 20493
        C02C2:TRF 1 20493
        C02C2:Dust 1 20493
        C02C2:inverted 1 20493
      Homol_data (20)
  Structure (3)
  DB_info: Database: EMBL NDB_AC FO080276
        NDB_ID _L23649
        NDB_SV FO080276.2
    Secondary_accession: L23649
    DB_remark: The 5' clone is ZK652, 2000 bp overlap; the 3' clone is ZK688, 1600 bp overlap. Actual start of this clone is at base position 24249 of ZK652; actual end is at 11020 of ZK688.
      [121025] Sequence correction WBsf268387 : Deletion C-1 bases @ 2000
      [121025] Sequence correction WBsf268200 : Deletion C-1 bases @ 12396
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Wilson R
      Wilson RK
    From_laboratory: RW
    Date: 14 Aug 1992 00:00:00
      01 Sep 1993 00:00:00
      19 Feb 1996 00:00:00
    Date_directory: 960117
    Species: Caenorhabditis elegans
  Visible: Clone: C02C2
    Reference: WBPaper00015076
      WBPaper00022235
    Remark: [20100427 wnash] deleted -1 bp at position 19896 (between ctacttttcg and ggatcgaaaa)
  Properties: Genomic_canonical
    Checksum: MD5: 1042cf1046b4edfef3220534fe408f16
    Status: Finished
      Submitted: 14 Aug 1992 00:00:00
  Map: Sequence-III
  Interpolated_map_position: III -0.52366
  Method: Genomic_canonical