WormBase Tree Display for Sequence: T04A11

T04A11 DNA: T04A11 39283
  SMap: S_child: Gene_child (13)
      CDS_child: T04A11.1 4522 2790
        T04A11.2 6480 4853
        T04A11.3 6491 9906
        T04A11.3:wp191 6491 9906
        T04A11.4 12059 10327
        T04A11.5 14017 12390
        T04A11.6 18278 22620
        T04A11.6:wp84 15059 22620
        T04A11.7:wp105 23526 25324
        T04A11.7:wp131 23688 25324
        T04A11.7a 23688 25324
        T04A11.7a:wp261 23688 25324
        T04A11.7b:wp261 23688 25324
        T04A11.7c 24497 25324
        T04A11.7c:wp261 24497 25324
        T04A11.8 26018 27893
        T04A11.9 29780 31535
        T04A11.9:wp105 29780 31535
        T04A11.10 33177 34861
        T04A11.10:wp105 33177 35179
        T04A11.11 38028 39065
        T04A11.12:wp201 15059 17201
        T04A11.12a 15059 17098
        T04A11.12b 15059 17201
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g46n11_x25_IV_p 18278 22617
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g99_x25_IV_p 20175 22617
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g136_x25_IV_p 19114 19789
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g112n11_x25_IV_p 24497 24766
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g105_x25_IV_p 20277 21644
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g139_x25_IV_p 21874 22113
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g119_x25_IV_p 19820 20189
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g185_x25_IV_p 22285 22440
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g143_x25_IV_p 18946 19206
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g167_x25_IV_p 24356 24406
        RNASEQ_embryo_him-8_20dC_post-L1_g92_x25_IV_p 20043 21095
        RNASEQ_embryo_him-8_20dC_post-L1_g70n11_x25_IV_p 18278 19260
        RNASEQ_embryo_him-8_20dC_post-L1_g86_x25_IV_p 21076 22617
        RNASEQ_embryo_him-8_20dC_post-L1_g95_x25_IV_p 19820 19885
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g145_x25_IV_p 18946 19038
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g123_x25_IV_p 22093 22368
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g121_x25_IV_p 19922 21984
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g138_x25_IV_p 22407 22634
        RNASEQ_L4_soma_JK1107_no_DNaseI_g179_x25_IV_p 19375 19575
        RNASEQ_L4_soma_JK1107_no_DNaseI_g134_x25_IV_p 22381 22500
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g130_x25_IV_p 22178 22608
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g144_x25_IV_p 16589 17063
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g158_x25_IV_p 19922 20084
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g152_x25_IV_p 19387 19578
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g157_x25_IV_p 18946 19380
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g162_x25_IV_p 21546 22098
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g167_x25_IV_p 19820 19870
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g138_x25_IV_p 20175 20837
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g145_x25_IV_p 18449 18735
        RNASEQ_early_embryo_g101n11_x25_IV_p 18278 22617
        RNASEQ_early_embryo_g108n11_x25_IV_p 24497 25321
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g98n11_x25_IV_p 18278 22617
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g100_x25_IV_p 24497 25321
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g142_x25_IV_p 22285 22437
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g135_x25_IV_p 18413 18577
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g108_x25_IV_p 19820 22210
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g112_x25_IV_p 19820 22374
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g106_x25_IV_p 19820 22440
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g117_x25_IV_p 18946 19467
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g64n11_x25_IV_p 18278 22617
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g45n11_x25_IV_p 18278 22617
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g56n11_x25_IV_p 18278 22617
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g98_x25_IV_p 19820 22617
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g57n11_x25_IV_p 18278 19371
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g73n11_x25_IV_p 18278 22617
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g88_x25_IV_p 18946 22617
        T04A11.gc1 415 2369
        T04A11.gc2 4522 2790
        T04A11.gc3 6274 4853
        T04A11.gc4 6491 9906
        T04A11.gc5 12059 10372
        T04A11.gc6 14017 12390
        T04A11.gc7 18278 22620
        T04A11.gc8 23526 25324
        T04A11.gc9 26018 27311
        T04A11.gc10 29975 37491
        T04A11.gc11 38028 39065
        ContigIV.elegans.jigsaw.2558.mRNA2558 5351 4757
        ContigIV.elegans.jigsaw.2557.mRNA2557 4679 2756
        ContigIV.elegans.jigsaw.2567.mRNA2567 33140 34875
        ContigIV.elegans.jigsaw.2560.mRNA2560 12209 10293
        ContigIV.elegans.jigsaw.2566.mRNA2566 28804 31652
        ContigIV.elegans.jigsaw.2559.mRNA2559 6485 10219
        ContigIV.elegans.jigsaw.2561.mRNA2561 14139 12294
        ContigIV.elegans.jigsaw.2562.mRNA2562 15045 17291
        ContigIV.elegans.jigsaw.2565.mRNA2565 25930 28145
        ContigIV.elegans.jigsaw.2563.mRNA2563 18250 22767
        ContigIV.elegans.jigsaw.2564.mRNA2564 22950 25396
        AG1201_C25G4.10.T1 1605 2166
        AG1201_T04A11.1.T1w 4522 2790
        AG1201_T04A11.2.T1w 6480 4853
        AG1201_T04A11.3.T1 6491 9906
        AG1201_T04A11.4.T1 12059 10327
        AG1201_T04A11.5.T1 14017 12390
        AG1201_T04A11.12.T1 15059 17098
        AG1201_T04A11.12.T2 15059 17150
        AG1201_T04A11.6.T1 18278 22620
        AG1201_T04A11.7.T6 23688 25324
        AG1201_T04A11.7.T7 23688 25324
        AG1201_T04A11.7.T8 23688 25324
        AG1201_T04A11.7.T1 24421 25324
        AG1201_T04A11.7.T2 24421 25324
        AG1201_T04A11.7.T3 24497 25324
        AG1201_T04A11.8.T1 26018 27311
        AG1201_T04A11.8.T2 26018 27893
        AG1201_T04A11.9.T1 29780 31535
        AG1201_T04A11.10.T1 33177 34861
        AG1201_T04A11.10.T2 33177 34861
      Transcript (13)
      Pseudogene: T04A11.11:wp217 38028 39065
        T04A11.13:wp217 17883 17661
        T04A11.14 34889 35046
      PCR_product (108)
      Allele (312)
      Oligo_set: Aff_C25G4.10 1677 2369
        Aff_T04A11.1 3755 2790
        Aff_T04A11.10 34475 35179
        Aff_T04A11.2 6013 4853
        Aff_T04A11.6 21877 22620
        Aff_T04A11.7 24503 25324
        Aff_T04A11.8 26822 27893
        Aff_T04A11.9 30844 31535
      Feature_object (83)
      Feature_data: T04A11:Polysome 1 39283
        T04A11:TranscriptionallyActiveRegion 1 39283
        T04A11:ChIPSeqTF 1 39283
        T04A11:TRF 1 39283
        T04A11:Dust 1 39283
        T04A11:inverted 1 39283
      Homol_data: T04A11:RNAi 1 39283
        T04A11:SAGE 1 39283
        T04A11:Mass-spec 1 39283
        T04A11:BLAT_ncRNA 1 39283
        T04A11:Expr 1 39283
        T04A11:wublastx_brenneri 1 39283
        T04A11:wublastx_briggsae 1 39283
        T04A11:wublastx_brugia 1 39283
        T04A11:wublastx_fly 1 39283
        T04A11:wublastx_human 1 39283
        T04A11:wublastx_japonica 1 39283
        T04A11:wublastx_ovolvulus 1 39283
        T04A11:wublastx_pristionchus 1 39283
        T04A11:wublastx_remanei 1 39283
        T04A11:wublastx_slimSwissProt 1 39283
        T04A11:wublastx_sratti 1 39283
        T04A11:wublastx_tmuris 1 39283
        T04A11:wublastx_worm 1 39283
        T04A11:wublastx_yeast 1 39283
        T04A11:RepeatMasker 1 39283
  Structure: From: Source: CHROMOSOME_IV
    Overlap_right: F53B2 39183
    Overlap_left: C25G4
    Clone_left_end: F53B2 32199
  DB_info: Database: EMBL NDB_AC Z83123
        NDB_SV Z83123.1
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Barlow K
    From_laboratory: HX
    Date_directory: 970630
    Species: Caenorhabditis elegans
    Strain: WBStrain00000001
  Visible: Clone: T04A11
  Properties: Genomic_canonical
    Checksum: MD5: 6a86011901a37be70cd8b84619899450
    Status: Finished: 30 Jun 1997 00:00:00
      Submitted: 27 Nov 1996 00:00:00
      Annotated: 23 Jul 1997 00:00:00
  Map: Sequence-IV Ends: Left: 6470
        Right: 6493
  Interpolated_map_position: IV 5.98699
  Assembly_tags: Finished Left 1 4
    Clone left end 1 4 T04A11 clone left
      32199 32202 F53B2 clone left
      39280 39283 T04A11 clone right
    annotation 11869 11876
    Finished Right 39280 39283
  Method: Genomic_canonical