WormBase Tree Display for Sequence: C18D11

C18D11 DNA: C18D11 29249
  SMap: S_child: Gene_child: WBGene00007682 5902 6391
        WBGene00305278 25886 25967
        WBGene00077725 24594 24657
        WBGene00007680 17872 15092
        WBGene00004705 21764 26320
        WBGene00045211 4464 4907
        WBGene00007681 18794 20321
        WBGene00007679 11919 15152
        WBGene00194727 3064 3825
      CDS_child: C18D11.1 11924 14956
        C18D11.2 17814 15151
        C18D11.3 19138 19786
        C18D11.3:wp189 19138 19786
        C18D11.4a 21777 26074
        C18D11.4b 25301 26074
        C18D11.5:wp99 29043 26815
        C18D11.6 5906 6315
        C18D11.6:wp206 5343 6315
        C18D11.9 4464 4907
        C18D11.9:wp206 3681 4907
        C18D11.10 3142 3760
        Y56A3A.1b 29043 26815
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g20n11_x24_III_m 29043 26818
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g100_x24_III_m 17814 15154
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g42n11_x24_III_p 22208 26071
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g56_x24_III_p 19138 19783
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g46n11_x24_III_p 11924 14953
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g21n11_x24_III_p 21777 22012
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g42n11s1k180_x24_III_p 25301 25527
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g29n11_x24_III_m 29043 26818
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g102n11_x24_III_p 7789 7997
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g15n11_x24_III_p 11924 14953
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g69_x24_III_p 19138 19783
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g14n11s1k64_x24_III_p 25301 25527
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g105_x24_III_p 4464 4904
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g14n11_x24_III_p 21777 26071
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g49_x24_III_m 17814 15154
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g39n11_x24_III_p 21989 22015
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g48n11_x24_III_m 17814 15154
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g103_x24_III_p 4464 4904
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g12n11_x24_III_m 29043 26818
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g120_x24_III_m 1573 1514
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g101_x24_III_p 7789 7997
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g25n11_x24_III_p 21777 26071
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g75_x24_III_p 19138 19783
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g3n11_x24_III_p 11924 14953
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g25n11s1k63_x24_III_p 25301 25527
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g13n11_x24_III_p 21777 26071
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g61_x24_III_p 5912 6186
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g38_x24_III_p 19138 19783
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g12n11_x24_III_p 11924 14953
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g101_x24_III_m 16305 16126
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g34n11_x24_III_m 29043 26818
        RNASEQ_embryo_him-8_20dC_post-L1_g73_x24_III_p 19138 19783
        RNASEQ_embryo_him-8_20dC_post-L1_g17n11_x24_III_p 11924 14953
        RNASEQ_embryo_him-8_20dC_post-L1_g14n11_x24_III_m 29043 26818
        RNASEQ_embryo_him-8_20dC_post-L1_g2n11_x24_III_p 21777 26071
        RNASEQ_embryo_him-8_20dC_post-L1_g106_x24_III_p 5996 6198
        RNASEQ_embryo_him-8_20dC_post-L1_g83n11_x24_III_m 17814 15160
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g147_x24_III_p 7789 7892
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g40n11_x24_III_m 29043 26818
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g41n11_x24_III_p 21777 26071
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g13n11_x24_III_p 11924 14953
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g65_x24_III_m 17814 15154
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g79_x24_III_p 19138 19783
        RNASEQ_L4_soma_JK1107_no_DNaseI_g31n11_x24_III_m 29043 26818
        RNASEQ_L4_soma_JK1107_no_DNaseI_g74_x24_III_m 17814 15154
        RNASEQ_L4_soma_JK1107_no_DNaseI_g34n11_x24_III_p 21777 26071
        RNASEQ_L4_soma_JK1107_no_DNaseI_g17n11_x24_III_p 13658 14953
        RNASEQ_L4_soma_JK1107_no_DNaseI_g71_x24_III_p 19138 19783
        RNASEQ_L4_soma_JK1107_no_DNaseI_g119_x24_III_p 7807 7907
        RNASEQ_L4_soma_JK1107_no_DNaseI_g5n11_x24_III_p 11924 13774
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g21n11s1k221_x24_III_p 25301 25527
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g76_x24_III_p 19138 19783
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g21n11_x24_III_p 21777 26071
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g40n11_x24_III_m 29043 26818
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g80_x24_III_m 17814 15160
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g7n11_x24_III_p 11924 14953
        RNASEQ_early_embryo_g29n11_x24_III_p 21777 26071
        RNASEQ_early_embryo_g29n11s1k229_x24_III_p 25301 25527
        RNASEQ_early_embryo_g69_x24_III_m 16564 15154
        RNASEQ_early_embryo_g9n11_x24_III_p 22079 22081
        RNASEQ_early_embryo_g42_x24_III_p 19138 19783
        RNASEQ_early_embryo_g29n11e3k70_x24_III_p 24071 24458
        RNASEQ_early_embryo_g36n11_x24_III_p 11924 14953
        RNASEQ_early_embryo_g119_x24_III_m 1573 1511
        RNASEQ_early_embryo_g29n11e2k61_x24_III_p 21766 22331
        RNASEQ_early_embryo_g9n11e3k61_x24_III_p 22030 22332
        RNASEQ_early_embryo_g15n11_x24_III_m 29043 26818
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g41_x24_III_p 19138 19783
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g20n11_x24_III_p 21777 26071
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g22n11_x24_III_m 29043 26818
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g17n11_x24_III_p 13658 14953
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g58_x24_III_m 17814 15154
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g112_x24_III_p 5915 6162
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g30n11_x24_III_p 11924 13774
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g20n11s1k201_x24_III_p 25301 25527
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g25n11_x24_III_p 21777 26071
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g11_x24_III_p 19138 19783
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g129_x24_III_p 6269 6391
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g8n11_x24_III_p 11924 14953
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g19n11_x24_III_m 29043 26818
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g88_x24_III_p 22079 22081
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g77n11_x24_III_m 17814 15154
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g25n11s1k166_x24_III_p 25301 25527
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g31n11_x24_III_m 29043 28756
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g74n11_x24_III_m 17814 16266
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g4n11_x24_III_p 11924 14953
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g58_x24_III_m 16564 15154
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g16n11_x24_III_p 21777 26071
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g47_x24_III_p 19138 19783
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g71n11_x24_III_m 17814 15154
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g12n11s1k120_x24_III_p 25301 25527
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g29n11_x24_III_m 29043 26818
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g40_x24_III_p 19138 19783
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g12n11_x24_III_p 21777 26071
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g5n11_x24_III_p 11924 14953
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g5n11_x24_III_p 11924 13774
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g30n11_x24_III_p 13658 14953
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g49_x24_III_p 19138 19783
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g39n11_x24_III_m 29043 28756
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g115_x24_III_m 16291 16073
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g18n11_x24_III_p 21777 26071
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g92_x24_III_p 5909 6270
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g136_x24_III_m 17814 15175
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g74_x24_III_p 19138 19783
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g38e3k78_x24_III_m 29171 28723
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g31n11_x24_III_m 29043 26818
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g10n11_x24_III_p 21777 26071
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g47n11_x24_III_p 11924 14953
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g162_x24_III_p 3142 3676
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g20n11s1k66_x24_III_p 25301 25527
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g67n11_x24_III_p 19138 19783
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g19n11_x24_III_p 21777 26071
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g7n11_x24_III_p 22030 22104
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g20n11e2k50_x24_III_p 21766 22319
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g116_x24_III_m 17814 15178
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g20n11_x24_III_p 22208 24392
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g18n11_x24_III_m 29043 26818
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g50n11_x24_III_p 11924 14953
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g108_x24_III_m 2022 1881
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g9n11_x24_III_p 11924 14953
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g46n11_x24_III_m 29043 26818
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g71_x24_III_m 17814 15154
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g62_x24_III_p 19138 19783
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g59n11_x24_III_p 21777 26071
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g69n11_x24_III_p 25301 25527
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g15n11_x24_III_p 21777 26071
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g11_x24_III_p 5906 6312
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g60n11_x24_III_m 29043 26818
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g90_x24_III_p 19138 19783
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g47n11_x24_III_p 13658 13774
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g16n11_x24_III_p 11924 14953
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g96n11_x24_III_m 17814 15154
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g129_x24_III_p 3138 3227
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g87n11_x24_III_m 17814 15154
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g7n11s1k174_x24_III_p 25301 25527
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g14n11_x24_III_p 11924 14953
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g7n11_x24_III_p 21777 26071
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g18n11_x24_III_m 29043 28756
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g26_x24_III_p 19138 19783
        C18D11.gc1 2125 428
        C18D11.gc2 2733 7781
        C18D11.gc3 10225 14956
        C18D11.gc4 17814 15151
        C18D11.gc5 19138 19786
        C18D11.gc6 20453 26074
        C18D11.gc7 29171 26815
        ContigIII.elegans.jigsaw.2342.mRNA2342 11758 15149
        ContigIII.elegans.jigsaw.2345.mRNA2345 21748 26321
        ContigIII.elegans.jigsaw.2341.mRNA2341 5798 6392
        ContigIII.elegans.jigsaw.2344.mRNA2344 19078 21446
        ContigIII.elegans.jigsaw.2343.mRNA2343 17857 15100
        ContigIII.elegans.jigsaw.2340.mRNA2340 4358 4984
        AG1201_C18D11.10.T1 3142 3760
        AG1201_C18D11.9.T1 4464 4907
        AG1201_C18D11.6.T2 5906 6315
        AG1201_C18D11.6.T1 6101 6394
        AG1201_RIT3P.1326.T1 7789 8000
        AG1201_RIT3P.1326.T2 7807 8000
        AG1201_C18D11.1.T2 11924 14956
        AG1201_C18D11.1.T1 14795 14956
        AG1201_C18D11.2.T5 17814 15151
        AG1201_C18D11.2.T3 17814 16028
        AG1201_C18D11.2.T2 17814 16031
        AG1201_C18D11.2.T1 17814 16114
        AG1201_C18D11.2.T4 17814 16194
        AG1201_C18D11.3.T3 19138 19676
        AG1201_C18D11.3.T1 19138 19786
        AG1201_C18D11.3.T2 19138 19786
        AG1201_C18D11.4.T2 21777 26074
        AG1201_C18D11.4.T5 21777 26074
        AG1201_C18D11.4.T1 22079 26074
        AG1201_Y56A3A.1.T7 27648 26815
        AG1201_Y56A3A.1.T8 29043 26815
      Transcript (15)
      PCR_product (27)
      Allele (730)
      Oligo_set: Aff_C18D11.1 13177 14956
        Aff_C18D11.2 16561 15151
        Aff_C18D11.3 19138 19786
        Aff_C18D11.4 24285 26074
        Aff_C18D11.5 29043 26815
      Feature_object (384)
      Feature_data: C18D11:Polysome 1 29249
        C18D11:TranscriptionallyActiveRegion 1 29249
        C18D11:ChIPSeqTF 1 29249
        C18D11:TRF 1 29249
        C18D11:Dust 1 29249
        C18D11:inverted 1 29249
      Homol_data: C18D11:RNAi 1 29249
        C18D11:SAGE 1 29249
        C18D11:Mass-spec 1 29249
        C18D11:Expr 1 29249
        C18D11:TEC_RED 1 29249
        C18D11:G4_DNA 1 29249
        C18D11:wublastx_brenneri 1 29249
        C18D11:wublastx_briggsae 1 29249
        C18D11:wublastx_brugia 1 29249
        C18D11:wublastx_fly 1 29249
        C18D11:wublastx_human 1 29249
        C18D11:wublastx_japonica 1 29249
        C18D11:wublastx_ovolvulus 1 29249
        C18D11:wublastx_pristionchus 1 29249
        C18D11:wublastx_remanei 1 29249
        C18D11:wublastx_slimSwissProt 1 29249
        C18D11:wublastx_sratti 1 29249
        C18D11:wublastx_tmuris 1 29249
        C18D11:wublastx_worm 1 29249
        C18D11:wublastx_yeast 1 29249
        C18D11:RepeatMasker 1 29249
  Structure: From: Source: CHROMOSOME_III
    Overlap_right: Y56A3A 29146
    Overlap_left: C24H11
    Clone_right_end: C24H11 104
      C18D11 29249
  DB_info: Database: EMBL NDB_AC Z92826
        NDB_SV Z92826.1
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Barlow K
    From_laboratory: HX
    Date_directory: 980226
    Species: Caenorhabditis elegans
    Strain: WBStrain00000001
  Visible: Clone: C18D11
  Properties: Genomic_canonical
    Checksum: MD5: db489a06f0b6f41b44a299981247264e
    Status: Finished: 26 Feb 1998 00:00:00
      Submitted: 09 Mar 1997 00:00:00
      Annotated: 01 Jan 1980 00:00:00
  Map: Sequence-III Ends: Left: 6056
        Right: 6077
  Interpolated_map_position: III 13.2508
  Assembly_tags: Clone right end 101 104 C24H11
      29246 29249 C18D11
    Finished Left 1 4 C18D11
    annotation 28398 28414 this region is covered by a single clone which is a read generated from a sonication of clone sx66a5. This region is consistent with the digest
      28619 28607 Region contains repeat elements. The cosmid if consistent with the digest
    Finished Right 29246 29249 C18D11
  Method: Genomic_canonical