WormBase Tree Display for Pseudogene: B0250.3
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| B0250.3 | SMap | S_parent | Sequence | B0250 | |
|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 279 | ||
| 506 | 616 | ||||
| 674 | 1065 | ||||
| DB_info | DB_remark | coding pseudogene | |||
| Origin | From_laboratory | HX | |||
| Species | Caenorhabditis elegans | ||||
| Type | Coding_pseudogene | ||||
| Attributes | SubType | unprocessed_pseudogene | |||
| Visible | Gene | WBGene00007120 | |||
| Brief_identification | Curated Pseudogene | ||||
| Corresponding_PCR_product | mv_G_YK1930_1 | ||||
| Corresponding_oligo_set | A_12_P115002 | ||||
| GPL13394_WBGene00004413 | |||||
| GPL13914_B0250.1 | |||||
| GPL14144_B0250.1_648-707_0.890_15_C | |||||
| GPL14144_B0250.1_730-789_0.961_1_A | |||||
| GPL19516_CGZ0000468 | |||||
| GPL21109_B0250.1 | |||||
| GPL8673_B0250_1P00332 | |||||
| GPL9450_B0250.1 | |||||
| cea2.c.50222 | |||||
| Variation (42) | |||||
| Microarray_results (11) | |||||
| RNASeq_FPKM (74) | |||||
| Last_reviewed | 12 May 2006 00:00:00 | WBPerson4025 | |||
| Remark | [060512 gw3] Ian Hope thinks this is definitely a pseudogene. | Person_evidence | WBPerson266 | ||
| Curator_confirmed | WBPerson4025 | ||||
| [030508 pad] This is a 3 exon model but there is a putative frame shift in exon 1 preventing creation of this model. | Curator_confirmed | WBPerson1983 | |||
| [040415 pad] Gene prediction converted into a coding CDS as there is allot of protein homology as well as non-wild-type RNAi results and EST data. 5' end is truncated when compared to homology data but can creates a valid CDS. | Curator_confirmed | WBPerson1983 | |||
| [051208 pad] Gene prediction re-catagorised as a Pseudogene as the non-WT RNAi result is probably due to secondary hits to other elegans genes. Protein homology suggests this gene suffers from a frameshift in exon 1. | Curator_confirmed | WBPerson1983 | |||
| Method | Pseudogene |
