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WormBase Tree Display for Gene: WBGene00193580

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Name Class

WBGene00193580SMapS_parentSequenceCbre_Contig1582
IdentityVersion1
NameSequence_nameCBN31615
Molecular_nameCBN31615
CBN31615.1
CN34647
Public_nameCBN31615
SpeciesCaenorhabditis brenneri
HistoryVersion_change120 May 2009 11:55:53WBPerson1847EventCreated
StatusLive
Gene_infoBiotypeSO:0001217
RNASeq_FPKMWBls:00000021.88426From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
2.32776From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
2.99948From_analysisRNASeq.brenneri.WBls:0000002.control_mean
3.04056From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
3.21866From_analysisRNASeq.brenneri.WBls:0000002.control_median
3.39677From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
4.51234From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
4.67641From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
4.81484From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
5.34188From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
WBls:00000040.013757From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
0.027514From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
5.35049From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
6.83866From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
7.27306From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
8.05302From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
8.65715From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
WBls:00000380.03129From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
0.103211From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
0.175133From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:00000410.062845From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100773
0.075975From_analysisRNASeq.brenneri.WBls:0000041.control_median
0.089105From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100777
0.09798From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191967
0.107776From_analysisRNASeq.brenneri.WBls:0000041.control_mean
0.118379From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191966
0.123129From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191968
0.123214From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191969
0.225499From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100779
0.356638From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191970
0.527633From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100778
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100774
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100775
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100776
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX103654
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191965
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100780
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX103657
WBls:00001010.09798From_analysisRNASeq.brenneri.total_over_all_stages.control_median
1.03075From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
GO_annotation00229546
00229547
00229548
00229549
00229550
OrthologWBGene00006801Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00052257Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00124340Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
CBOVI.g2262Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g4665Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g3330Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g8818Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g5594Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g19710Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g10857Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g1182Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g12556Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g19315Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g4569Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g21529Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00439.g10869Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_01390.g16355Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_02379.g17124Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_02506.g17262Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_04140.g18630Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_05389.g19560Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_06964.g20594Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_10065.g22436Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_13819.g24396Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_16100.g25259Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_18335.g25942Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-unc-68Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_V.g19947Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold556.g3752Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold556.g3753Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00905.g16628Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_15641Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_018015Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g10076Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g4808Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g4810Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50223100Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00038324Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00225260Brugia malayiFrom_analysisWormBase-Compara
chrV_pilon.g14545Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00209587Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00216080Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00218877Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00245273Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00276305Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00256983Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00296466Trichuris murisFrom_analysisWormBase-Compara
WBGene00296467Trichuris murisFrom_analysisWormBase-Compara
WBGene00301423Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00163093Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
GeneACeDB-Compara
WBGene00191347Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00192195Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00193883Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00193891Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
Structured_descriptionAutomated_descriptionPredicted to enable ryanodine-sensitive calcium-release channel activity. Predicted to be involved in calcium ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans unc-68. In C. elegans, unc-68 is involved in locomotion; positive regulation of programmed cell death; and protein localization to organelle.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN31615
Corresponding_transcriptCBN31615.1
Other_sequenceHS01016
MH00549
MC05256
SSC06493_1
SS00686
HSC01335_1
BMC15717_1
Experimental_infoMicroarray_resultsGPL14142_CBN31615_7887-7946_0.956_1_A
GPL14142_CBN31615_7892-7951_0.938_2_B
GPL14142_CBN31615_7901-7960_0.904_6_C
MethodGene