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WormBase Tree Display for Gene: WBGene00164109

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Name Class

WBGene00164109SMapS_parentSequenceCbre_Contig132
IdentityVersion2
NameCGC_nameCbn-agxt-1.1From_analysisInferred_from_orthology
Sequence_nameCBN25384
Molecular_nameCBN25384
CBN25384.1
CN12876
Public_nameCbn-agxt-1.1
SpeciesCaenorhabditis brenneri
HistoryVersion_change101 Oct 2008 13:29:52WBPerson4055EventImportedfrom NGASP
220 Mar 2018 10:26:12WBPerson4025Name_changeCGC_nameCbn-agxt-1.1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classagxt
RNASeq_FPKMWBls:0000002 (11)
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
RNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
WBls:000002412.4347From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
15.2788From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
7.16114From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
9.06917From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
9.48086From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
WBls:00000380.050832From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
0.127258From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
0.203685From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:000004110.6821From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191969
13.4677From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191968
14.3432From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191970
0From_analysis (12)
3.25909From_analysisRNASeq.brenneri.WBls:0000041.control_mean
6.4901From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191966
7.1623From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191967
WBls:00001010From_analysisRNASeq.brenneri.total_over_all_stages.control_median
4.20114From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
Ortholog (26)
ParalogWBGene00153971Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
GeneACeDB-Compara
WBGene00143342Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00194232Caenorhabditis brenneriFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Aminotransferase class-V; Pyridoxal phosphate-dependent transferase; Pyridoxal phosphate-dependent transferase, major domain; Aminotransferase class V domain; Pyridoxal phosphate-dependent transferase, small domain; and Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase. Is an ortholog of C. elegans agxt-1. In C. elegans, agxt-1 is involved in glycine biosynthetic process, by transamination of glyoxylate.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN25384
Corresponding_transcriptCBN25384.1
Other_sequence (63)
MethodGene