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WormBase Tree Display for Gene: WBGene00151558

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Name Class

WBGene00151558SMapS_parentSequenceCbre_Contig0
IdentityVersion1
NameCGC_nameCbn-unc-78From_analysisInferred_from_orthology
Sequence_nameCBN12833
Molecular_nameCBN12833
CBN12833.1
CN22232
Other_nameCBN12833
Public_nameCbn-unc-78
SpeciesCaenorhabditis brenneri
HistoryVersion_change130 Oct 2008 10:39:28WBPerson4055EventImportedfrom NGASP
Name_changeCGC_nameCbn-unc-78
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classunc
RNASeq_FPKMWBls:000000211.7976From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
12.0537From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
14.1339From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
22.2431From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
3.98149From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
7.19305From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
8.89373From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
8.94229From_analysisRNASeq.brenneri.WBls:0000002.control_mean
9.01003From_analysisRNASeq.brenneri.WBls:0000002.control_median
9.12634From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
WBls:0000004105.976From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
57.9653From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
9.9546From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:000002417.9474From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
22.1162From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
22.6332From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
23.3356From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
25.7153From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
WBls:000003858.4513From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
60.2637From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
62.0761From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:0000041148.748From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191965
15.0461From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100777
15.2738From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100778
17.4364From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191966
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX103657
20.4491From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100780
21.7795From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100779
22.9073From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191967
22.9434From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100775
25.1497From_analysisRNASeq.brenneri.WBls:0000041.control_median
27.3559From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100773
29.863From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100774
31.7647From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191969
31.8064From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX103654
32.5795From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191968
32.5986From_analysisRNASeq.brenneri.WBls:0000041.control_mean
36.896From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100776
46.7284From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191970
WBls:000010120.4491From_analysisRNASeq.brenneri.total_over_all_stages.control_median
27.3374From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
OrthologWBGene00006810Caenorhabditis elegansFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00034778Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00051990Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00123062Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00127334Caenorhabditis japonicaFrom_analysisTreeFam
CBOVI.g2528Caenorhabditis bovisFrom_analysisWormBase-Compara
CBOVI.g9851Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g13119Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g13120Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g16341Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g2549Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g5704Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g9739Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g3871Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g10480Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g5887Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g6423Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g9006Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g5069Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g17616Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g19896Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g25454Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g16269Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_01196.g15949Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_X.g23863Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g18166Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01673.g22444Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_00838Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_024093Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g14143Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g19544Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g5756Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0270800Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00233956Brugia malayiFrom_analysisWormBase-Compara
chrX_pilon.g18753Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00242169Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00304898Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00256053Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00287933Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00161938Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
GeneACeDB-Compara
WBGene00164128Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Anaphase-promoting complex subunit 4, WD40 domain; WD domain, G-beta repeat; Anaphase-promoting complex subunit 4 WD40 domain; WD40-repeat-containing domain superfamily; G-protein beta WD-40 repeat; WD40/YVTN repeat-like-containing domain superfamily; and WD40 repeat. Is an ortholog of C. elegans unc-78. In C. elegans, unc-78 is involved in several processes, including myofibril assembly; regulation of actin polymerization or depolymerization; and regulation of locomotion.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN12833
Corresponding_transcriptCBN12833.1
Other_sequenceSRC00391_1
JO467666.1
PPC02445_1
JI164870.1
Acan_isotig02211
SSC03731_1
ACC15617_1
Acan_isotig02210
ACC10624_1
SR03623
CJC06423_1
FC818890.1
EX554810.1
Tcol_isotig02224
Tcol_isotig02223
Acan_isotig02209
EX916160.1
FC819313.1
TCC01734_1
EX559491.1
PP02109
Tcol_isotig02221
SS03183
PTC02180_1
SR00329
Dviv_isotig27341
TX01539
PT02655
Tcol_isotig02222
EY468780.1
MI04096
EG025773.1
MIC01804_1
FC539090.1
CR04548
Hbac_isotig01512
CR02080
CJC01140_1
CRC02077_1
MI00481
CJC00179_1
CR06711
Experimental_infoMicroarray_resultsGPL14142_CBN12833_1348-1407_0.904_20_C
GPL14142_CBN12833_1680-1739_0.910_16_B
GPL14142_CBN12833_1773-1832_0.954_1_A
MethodGene