WormBase Tree Display for Gene: WBGene00139642

WBGene00139642 SMap: S_parent: Sequence: Cbre_Contig148
  Identity: Version: 2
    Name: CGC_name: Cbn-ced-5.1 From_analysis: Inferred_from_orthology
      Sequence_name: CBN00917
      Molecular_name: CBN00917
        CBN00917.1
        CN30363
      Public_name: Cbn-ced-5.1
    Species: Caenorhabditis brenneri
    History: Version_change: 1 01 Oct 2008 13:29:50 WBPerson4055 Event: Imported: from NGASP
        2 20 Mar 2018 10:26:13 WBPerson4025 Name_change: CGC_name: Cbn-ced-5.1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ced
    RNASeq_FPKM: WBls:0000002 (11)
      WBls:0000004 12.105 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
        6.0525 From_analysis: RNASeq.brenneri.WBls:0000004.control_mean
            RNASeq.brenneri.WBls:0000004.control_median
      WBls:0000024 10.4924 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
        11.9869 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
        6.7577 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
        6.82191 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
        9.74534 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
      WBls:0000038 3.01805 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
        3.18408 From_analysis: RNASeq.brenneri.WBls:0000038.control_mean
            RNASeq.brenneri.WBls:0000038.control_median
        3.35012 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
      WBls:0000041 (17)
      WBls:0000101 2.90196 From_analysis: RNASeq.brenneri.total_over_all_stages.control_median
        3.42647 From_analysis: RNASeq.brenneri.total_over_all_stages.control_mean
    GO_annotation: 00202842
      00202843
    Ortholog (33)
    Paralog: WBGene00158152 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00139428 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00158742 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00159215 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00160740 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00163437 Caenorhabditis brenneri From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in small GTPase mediated signal transduction. Is an ortholog of C. elegans ced-5. In C. elegans, ced-5 is involved in several processes, including left/right axis specification; positive regulation of distal tip cell migration; and vesicle-mediated transport. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBN00917
    Corresponding_CDS_history: CBN00917:np197
    Corresponding_transcript: CBN00917.1
    Other_sequence: JI164071.1
      NB07039
      Dviv_isotig13167
      JI460702.1
      NBC01044_1
  Experimental_info: Microarray_results: GPL14142_CBN00917_4696-4755_0.911_17_A
      GPL14142_CBN00917_4911-4970_0.759_243_C
      GPL14142_CBN00917_5227-5286_0.638_667_B
  Method: Gene