WormBase Tree Display for Gene: WBGene00127479

WBGene00127479 SMap: S_parent: Sequence: Cjap.Contig18099
  Identity: Version: 7
    Name: CGC_name: Cjp-ced-5.1 From_analysis: Inferred_from_orthology
      Sequence_name: CJA08276
      Molecular_name: CJA08276a
        CJA08276a.1
        JA50970
        CJA08276b
        JA61210
        CJA08276b.1
      Public_name: Cjp-ced-5.1
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:21 WBPerson4055 Event: Imported: NGASP import
        2 27 Jan 2009 12:59:24 WBPerson4055 Name_change: CGC_name: Cjp-ced-5
        3 29 Jul 2011 11:13:37 WBPerson4055 Event: Imported: Augustus import
        4 20 Mar 2018 10:26:13 WBPerson4025 Name_change: CGC_name: Removed
        5 08 Feb 2019 15:42:27 WBPerson1983 Name_change: CGC_name: Cjp-ced-5.1
        6 04 Feb 2020 15:43:57 WBPerson1983 Name_change: CGC_name: Removed
        7 28 May 2021 19:05:19 WBPerson1983 Name_change: CGC_name: Cjp-ced-5.1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ced
    RNASeq_FPKM: WBls:0000004 5.98674 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 8.12825 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 5.00605 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
        5.11985 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        5.23365 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
      WBls:0000041 10.4001 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
        10.5131 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        2.13135 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
        2.18145 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        2.35952 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        2.46514 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        5.94509 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        6.14713 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        9.42503 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        9.70136 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
      WBls:0000101 5.23365 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
        5.65629 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
    GO_annotation: 00193225
      00193226
    Ortholog (34)
    Paralog: WBGene00212097 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00133981 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00134894 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00210694 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00216606 Caenorhabditis japonica From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in small GTPase mediated signal transduction. Is an ortholog of C. elegans ced-5. In C. elegans, ced-5 is involved in several processes, including left/right axis specification; positive regulation of distal tip cell migration; and vesicle-mediated transport. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA08276a
      CJA08276b
    Corresponding_transcript: CJA08276a.1
      CJA08276b.1
    Other_sequence: FG977804.1
      Acan_isotig17700
      CJC04097_1
      JI478861.1
      BE225430.1
      Acan_isotig08629
      MJC01026_1
      JI483962.1
      MJ02001
      JI471860.1
  Experimental_info: Expr_pattern: Expr1090338
    Microarray_results: GPL14145_CJA10489_433-492_0.943_1_A
  Remark: [180319 gw3] The CGC name Cjp-ced-5 was deleted as there was no evidence to support it. This name has correctly been assigned to WBGene00212097 Curator_confirmed: WBPerson4025
    [200204 pad] The CGC name Cjp-ced-5.1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene