WormBase Tree Display for Gene: WBGene00126443

WBGene00126443 SMap: S_parent: Sequence: Cjap.Contig17664
  Identity: Version: 7
    Name: Sequence_name: CJA07239
      Molecular_name: CJA07239a
        CJA07239a.1
        JA60242
        CJA07239b
        JA05930
        CJA07239b.1
      Public_name: CJA07239
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:21 WBPerson4055 Event: Imported: from NGASP
              Name_change: CGC_name: Cjp-lys-1
        2 29 Jul 2011 11:13:37 WBPerson4055 Event: Imported: Augustus import
        3 20 Mar 2018 10:26:13 WBPerson4025 Name_change: CGC_name: Removed
        4 08 May 2019 10:09:28 WBPerson1983 Name_change: CGC_name: Cjp-lys-2.2
        5 27 Nov 2019 12:48:15 WBPerson1983 Name_change: CGC_name: Removed
        6 04 Feb 2020 15:43:57 WBPerson1983 Name_change: CGC_name: Cjp-lys-2.2
        7 28 May 2021 19:05:20 WBPerson1983 Name_change: CGC_name: Removed
    Status: Live
  Gene_info: Biotype: SO:0001217
    RNASeq_FPKM: WBls:0000004 65.2834 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 1671.27 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 2982.97 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
        3093.74 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        3204.5 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
      WBls:0000041 1098.37 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        1708.24 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        1720.41 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        1766.09 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        614.793 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
        638.45 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        752.354 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        783.379 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        793.304 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        803.228 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
      WBls:0000101 1285.46 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
        803.228 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
    Ortholog (17)
    Paralog: WBGene00119871 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00121518 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00121985 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00123483 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00123659 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00132513 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00129637 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00206956 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domain: Glycoside hydrolase superfamily. Is an ortholog of C. elegans lys-1 and lys-2. In C. elegans, lys-1 is involved in defense response to Gram-negative bacterium; defense response to Gram-positive bacterium; and innate immune response. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA07239a
      CJA07239b
    Corresponding_transcript: CJA07239a.1
      CJA07239b.1
    Other_sequence (132)
  Experimental_info: Expr_pattern: Expr1081166
    Microarray_results: GPL14145_CJA07239_338-397_0.924_7_C
      GPL14145_CJA07239_489-548_0.942_1_A
      GPL14145_CJA07239_712-771_0.939_3_B
  Remark: [180319 gw3] The CGC name Cjp-lys-1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson4025
    [191127 pad] The CGC name Cjp-lys-2.2 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [210528 pad] The CGC name Cjp-lys-2.2 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene