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WormBase Tree Display for Gene: WBGene00125390

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Name Class

WBGene00125390SMapS_parentSequenceCjap.Contig18184
IdentityVersion2
NameCGC_nameCjp-lpr-3From_analysisInferred_from_orthology
Sequence_nameCJA06186
Molecular_nameCJA06186
CJA06186.1
JA65405
Public_nameCjp-lpr-3
SpeciesCaenorhabditis japonica
HistoryVersion_change129 Aug 2008 14:34:21WBPerson4055EventImportedfrom NGASP
Name_changeCGC_nameCjp-lpr-3
229 Jul 2011 11:13:37WBPerson4055EventImportedAugustus import
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlpr
RNASeq_FPKMWBls:0000004339.876From_analysisRNASeq.japonica.WBls:0000004.control_mean
RNASeq.japonica.WBls:0000004.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:0000027327.525From_analysisRNASeq.japonica.WBls:0000027.control_mean
RNASeq.japonica.WBls:0000027.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:0000038356.506From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
358.357From_analysisRNASeq.japonica.WBls:0000038.control_mean
RNASeq.japonica.WBls:0000038.control_median
360.207From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004110.5099From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
12.3955From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
13.0491From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
13.9054From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
3.00468From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
4.37086From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
6.60488From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
6.87126From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
8.69058From_analysisRNASeq.japonica.WBls:0000041.control_median
8.83895From_analysisRNASeq.japonica.WBls:0000041.control_mean
WBls:0000101111.91From_analysisRNASeq.japonica.total_over_all_stages.control_mean
12.3955From_analysisRNASeq.japonica.total_over_all_stages.control_median
OrthologWBGene00012261Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00037114Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00058358Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00143040Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00226448Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g2591Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g1601Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g12191Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g14454Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g15901Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g10071Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g1373Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g20658Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g19649Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g6497Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00036.g2020Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-lpr-3Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold515.g2640Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00025.g1448Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_01202Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_023700Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g00490Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g23824Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0081420Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00241473Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00281847Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00267880Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00289705Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00120691Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00123546Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00135185Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domain: Calycin. Is an ortholog of C. elegans lpr-3.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCJA06186
Corresponding_transcriptCJA06186.1
Other_sequenceSS00937
FC817394.1
JI167223.1
CR09416
FF681227.1
CJC13306_1
BXC05112_1
FG975508.1
CRC06118_1
MPC01372_1
HBC00353_1
FG973881.1
Oden_isotig24271
CN477536.1
FG977074.1
HBC01035_1
FF680888.1
FG976565.1
MCC00335_1
FG972473.1
MP01791
TVC01316_1
FG977522.1
FG979160.1
FG972498.1
JI169987.1
CBC04167_1
FG977575.1
Tcol_isotig26187
FG976879.1
FC815951.1
FC810525.1
SRC01486_1
FF680907.1
SSC03605_1
CJC01210_1
SR00200
MP01534
CR02311
Dviv_isotig23399
MPC00597_1
JI459371.1
FG348002.1
FC811817.1
MC01657
FG979748.1
TV01490
Hbac_isotig01413
Oden_isotig28315
JO468697.1
BUC01940_1
Experimental_infoExpr_patternExpr1071425
Microarray_resultsGPL14145_CJA06186_1164-1223_0.945_3_C
GPL14145_CJA06186_1272-1331_0.952_1_B
GPL14145_CJA06186_1430-1489_0.815_66_A
MethodGene