WormBase Tree Display for Gene: WBGene00120394

WBGene00120394 SMap: S_parent: Sequence: Cjap.Contig17533
  Identity: Version: 3
    Name: Sequence_name: CJA01190
      Molecular_name: CJA01190
        CJA01190.1
        JA41806
      Public_name: CJA01190
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:20 WBPerson4055 Event: Imported: from NGASP
              Name_change: CGC_name: Cjp-ego-1
        2 29 Jul 2011 11:13:36 WBPerson4055 Event: Imported: Augustus import
        3 20 Mar 2018 10:26:13 WBPerson4025 Name_change: CGC_name: Removed
    Status: Live
  Gene_info: Biotype: SO:0001217
    RNASeq_FPKM: WBls:0000004 12.185 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 11.0293 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 7.15259 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
        7.32308 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        7.49357 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
      WBls:0000041 12.4008 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        12.9386 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        19.4836 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
        20.2465 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        20.5742 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        21.4608 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        3.38645 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        3.8083 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        3.8526 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        6.39369 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
      WBls:0000101 10.5436 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
        7.49357 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
    GO_annotation: 00187551
      00187552
      00187553
      00187554
    Ortholog (44)
    Paralog: WBGene00121308 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00138302 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00213870 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable DNA binding activity and RNA-dependent RNA polymerase activity. Predicted to be involved in DNA integration and DNA transposition. Is an ortholog of C. elegans rrf-1 and rrf-2. In C. elegans, rrf-1 is involved in siRNA processing. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA01190
    Corresponding_transcript: CJA01190.1
    Other_sequence: JI164383.1
      Dviv_isotig30373
      Hbac_isotig06854
      HQ611978.1
      HQ611977.1
      Oden_isotig15013
  Experimental_info: Expr_pattern: Expr1076152
      Expr1090628
    Microarray_results: GPL14145_CJA00340_266-325_0.942_1_A
      GPL14145_CJA01190_10334-10393_0.957_1_A
      GPL14145_CJA01190_10337-10396_0.946_2_B
      GPL14145_CJA01190_9456-9515_0.882_34_C
  Remark: [180319 gw3] The CGC name Cjp-ego-1 was deleted as there was no evidence to support it. This name has correctly been assigned to WBGene00213870 Curator_confirmed: WBPerson4025
  Method: Gene