WormBase Tree Display for Gene: WBGene00117845
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| WBGene00117845 | SMap | S_parent | Sequence | PPA_ChrII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 5 | |||||||
| Name | CGC_name | Ppa-lin-38.1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA28291 | ||||||||
| Molecular_name | PPA28291 | ||||||||
| PPA28291.1 | |||||||||
| PP75083 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000086708 | ||||||||
| UMM-S10-80.4 | Person_evidence | WBPerson606 | |||||||
| Ppa-lin-38 | From_analysis | Inferred_from_orthology | |||||||
| Public_name | Ppa-lin-38.1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:07 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 20 Mar 2018 10:26:10 | WBPerson4025 | Name_change | CGC_name | Ppa-lin-38 | ||||
| 3 | 08 May 2019 10:09:28 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 28 May 2021 19:05:19 | WBPerson1983 | Name_change | CGC_name | Ppa-lin-38 | ||||
| 5 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-lin-38.1 | ||||
| Other_name | Ppa-lin-38 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lin | ||||||||
| RNASeq_FPKM | WBls:0000032 | 19.8823 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 12.8891 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 18.7851 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| Ortholog | WBGene00013006 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
| WBGene00039682 | Caenorhabditis briggsae | From_analysis | Inparanoid_8 | ||||||
| WBGene00057619 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
| WBGene00149408 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
| Structured_description | Automated_description | Is predicted to encode a protein with the following domain: Zinc finger C2H2-type. Is an ortholog of C. elegans lin-38. In C. elegans, lin-38 is involved in negative regulation of vulval development. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA28291 | |||||||
| Corresponding_CDS_history | PPA28291:pp272 | ||||||||
| Corresponding_transcript | PPA28291.1 | ||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_59161 | |||||||
| GPL14372_Probes_59162 | |||||||||
| GPL14372_Probes_59163 | |||||||||
| GPL14372_Probes_59165 | |||||||||
| GPL14372_Probes_59166 | |||||||||
| Expression_cluster | WBPaper00041466:PP_germline-ablation_regulated | ||||||||
| Remark | [190507 pad] The CGC name Ppa-lin-38 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| Method | Gene |
