WormBase Tree Display for Gene: WBGene00116897
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| WBGene00116897 | SMap | S_parent | Sequence | PPA_ChrI | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 6 | |||||||
| Name | CGC_name | Ppa-ife-3 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA27343 | ||||||||
| Molecular_name | PPA27343 | ||||||||
| PPA27343.1 | |||||||||
| PP18419 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000084164 | ||||||||
| UMM-S7-49.38 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-ife-3 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:07 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 20 Mar 2018 10:26:12 | WBPerson4025 | Name_change | CGC_name | Ppa-ife-3 | ||||
| 3 | 08 Feb 2019 15:42:29 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 08 May 2019 10:09:26 | WBPerson1983 | Name_change | CGC_name | Ppa-ife-3 | ||||
| 5 | 28 May 2021 19:05:21 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-ife-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ife | ||||||||
| RNASeq_FPKM | WBls:0000032 | 53.2066 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 36.939 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 53.2066 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| 57.6105 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00185610 | ||||||||
| 00185611 | |||||||||
| 00185612 | |||||||||
| Ortholog (49) | |||||||||
| Paralog | WBGene00116828 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| WBGene00205570 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable RNA binding activity and translation initiation factor activity. Predicted to be involved in translational initiation. Is an ortholog of C. elegans ife-3. In C. elegans, ife-3 is involved in embryo development. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA27343 | |||||||
| Corresponding_transcript | PPA27343.1 | ||||||||
| Other_sequence (102) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_36376 | |||||||
| GPL14372_Probes_36377 | |||||||||
| GPL14372_Probes_36378 | |||||||||
| GPL14372_Probes_36379 | |||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_up | ||||||||
| WBPaper00041606:PP_X.nematophila_regulated | |||||||||
| Remark | [190208 pad] The CGC name Ppa-ife-3 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-ife-3 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
