WormBase Tree Display for Gene: WBGene00109284
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| WBGene00109284 | SMap | S_parent | Sequence | PPA_ChrIV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 6 | |||||||
| Name | CGC_name | Ppa-ubc-13 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA19730 | ||||||||
| Molecular_name | PPA19730 | ||||||||
| PPA19730.1 | |||||||||
| PP55235 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000076316 | ||||||||
| UMM-S230-2.12 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-ubc-13 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:06 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 18 Nov 2010 13:24:32 | WBPerson2970 | Name_change | CGC_name | removed | ||||
| 3 | 17 Nov 2017 15:19:43 | WBPerson4055 | Name_change | CGC_name | Ppa-ubc-13 | ||||
| 4 | 24 Nov 2017 09:46:52 | WBPerson4055 | Event | Acquires_merge | WBGene00204762 | ||||
| 5 | 20 Mar 2018 10:26:13 | WBPerson4025 | Name_change | CGC_name | Removed | ||||
| 6 | 28 Jul 2021 11:12:28 | WBPerson1983 | Name_change | CGC_name | Ppa-ubc-13 | ||||
| Acquires_merge | WBGene00204762 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ubc | ||||||||
| RNASeq_FPKM | WBls:0000032 | 99.586 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 151.592 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | ||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 83.726 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| 99.586 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| Ortholog (31) | |||||||||
| Paralog (11) | |||||||||
| Structured_description | Automated_description | Is predicted to encode a protein with the following domains: Ubiquitin-conjugating enzyme E2; Ubiquitin-conjugating enzyme/RWD-like; BAP29/BAP31, transmembrane domain; Bap31/Bap29 cytoplasmic coiled-coil domain; Ubiquitin-conjugating enzyme; SAP domain superfamily; Bap31/Bap29 transmembrane region; and ARMET, C-terminal. Is an ortholog of C. elegans ubc-13. In C. elegans, ubc-13 is involved in protein ubiquitination and regulation of protein localization to cell surface. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA19730 | |||||||
| Corresponding_transcript | PPA19730.1 | ||||||||
| Other_sequence (184) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_59372 | |||||||
| GPL14372_Probes_59373 | |||||||||
| GPL14372_Probes_59374 | |||||||||
| GPL14372_Probes_59375 | |||||||||
| GPL14372_Probes_59376 | |||||||||
| GPL14372_Probes_59378 | |||||||||
| GPL14372_Probes_59380 | |||||||||
| GPL14372_Probes_59381 | |||||||||
| GPL14372_Probes_59382 | |||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_up | ||||||||
| WBPaper00041466:PP_germline-ablation_regulated | |||||||||
| WBPaper00041606:PP_X.nematophila_regulated | |||||||||
| Remark | PPA19730 replaces Ppa-ubc-13 as Public_name | Curator_confirmed | WBPerson2970 | ||||||
| [180319 gw3] The CGC name Ppa-ubc-13 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson4025 | |||||||
| Method | Gene |
